Gene : VAT1 A. thaliana TAIR10
Primary Identifier:  ? AT5G16290 Defline:  (1 of 1) PTHR30239//PTHR30239:SF6 - ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT // ACETOLACTATE SYNTHASE SMALL SUBUNIT 1, CHLOROPLASTIC
Genomic Order:  1532 Name:  ? AT5G16290
Secondary Identifier:  ? PAC:19670727
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis thaliana pathologic  
Athaliana ILEUSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-3001 Arabidopsis thaliana pathologic  
Athaliana VALSYN-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16290 0.5kb upstream 0.5kb upstream 4482 true Chr5: 5333264-5337745 Arabidopsis thaliana
AT5G16290 0.5kb upstream 0.5kb upstream 500 false Chr5: 5333264-5333763 Arabidopsis thaliana
AT5G16290 0.5kb downstream 0.5kb downstream 4482 true Chr5: 5333764-5338245 Arabidopsis thaliana
AT5G16290 0.5kb downstream 0.5kb downstream 500 false Chr5: 5337746-5338245 Arabidopsis thaliana
AT5G16290 1.0kb upstream 1.0kb upstream 4982 true Chr5: 5332764-5337745 Arabidopsis thaliana
AT5G16290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5332764-5333763 Arabidopsis thaliana
AT5G16290 1.0kb downstream 1.0kb downstream 4982 true Chr5: 5333764-5338745 Arabidopsis thaliana
AT5G16290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5337746-5338745 Arabidopsis thaliana
AT5G16290 2.0kb upstream 2.0kb upstream 5982 true Chr5: 5331764-5337745 Arabidopsis thaliana
AT5G16290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5331764-5333763 Arabidopsis thaliana
AT5G16290 2.0kb downstream 2.0kb downstream 5982 true Chr5: 5333764-5339745 Arabidopsis thaliana
AT5G16290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5337746-5339745 Arabidopsis thaliana
AT5G16290 5.0kb upstream 5.0kb upstream 8982 true Chr5: 5328764-5337745 Arabidopsis thaliana
AT5G16290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5328764-5333763 Arabidopsis thaliana
AT5G16290 5.0kb downstream 5.0kb downstream 8982 true Chr5: 5333764-5342745 Arabidopsis thaliana
AT5G16290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5337746-5342745 Arabidopsis thaliana
AT5G16290 10.0kb upstream 10.0kb upstream 13982 true Chr5: 5323764-5337745 Arabidopsis thaliana
AT5G16290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5323764-5333763 Arabidopsis thaliana
AT5G16290 10.0kb downstream 10.0kb downstream 13982 true Chr5: 5333764-5347745 Arabidopsis thaliana
AT5G16290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5337746-5347745 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041401 5273 Angiosperm View MSA
122368277 5261 Brassicaceae View MSA
123831062 5264 Brassicales-Malvales View MSA
124348277 5266 SBM View MSA
124249637 5268 Malvidae View MSA
124071957 5270 Rosid View MSA
123740073 5271 Pentapetalae View MSA
122796860 5272 Eudicot View MSA
121347297 5274 Embryophyte View MSA
123426079 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.282        
cufflinks 5.546        
cufflinks 5.598        
cufflinks 7.141       High
cufflinks 4.79       Low
cufflinks 5.819        

0 Strain