Gene : AT5G16240 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31155:SF4 - ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1525
Name:  ? AT5G16240 Secondary Identifier:  ? PAC:19665603
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5147 Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-5366 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16240 0.5kb upstream 0.5kb upstream 3626 true Chr5: 5306307-5309932 Arabidopsis thaliana
AT5G16240 0.5kb upstream 0.5kb upstream 500 false Chr5: 5306307-5306806 Arabidopsis thaliana
AT5G16240 0.5kb downstream 0.5kb downstream 3626 true Chr5: 5306807-5310432 Arabidopsis thaliana
AT5G16240 0.5kb downstream 0.5kb downstream 500 false Chr5: 5309933-5310432 Arabidopsis thaliana
AT5G16240 1.0kb upstream 1.0kb upstream 4126 true Chr5: 5305807-5309932 Arabidopsis thaliana
AT5G16240 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5305807-5306806 Arabidopsis thaliana
AT5G16240 1.0kb downstream 1.0kb downstream 4126 true Chr5: 5306807-5310932 Arabidopsis thaliana
AT5G16240 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5309933-5310932 Arabidopsis thaliana
AT5G16240 2.0kb upstream 2.0kb upstream 5126 true Chr5: 5304807-5309932 Arabidopsis thaliana
AT5G16240 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5304807-5306806 Arabidopsis thaliana
AT5G16240 2.0kb downstream 2.0kb downstream 5126 true Chr5: 5306807-5311932 Arabidopsis thaliana
AT5G16240 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5309933-5311932 Arabidopsis thaliana
AT5G16240 5.0kb upstream 5.0kb upstream 8126 true Chr5: 5301807-5309932 Arabidopsis thaliana
AT5G16240 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5301807-5306806 Arabidopsis thaliana
AT5G16240 5.0kb downstream 5.0kb downstream 8126 true Chr5: 5306807-5314932 Arabidopsis thaliana
AT5G16240 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5309933-5314932 Arabidopsis thaliana
AT5G16240 10.0kb upstream 10.0kb upstream 13126 true Chr5: 5296807-5309932 Arabidopsis thaliana
AT5G16240 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5296807-5306806 Arabidopsis thaliana
AT5G16240 10.0kb downstream 10.0kb downstream 13126 true Chr5: 5306807-5319932 Arabidopsis thaliana
AT5G16240 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5309933-5319932 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510829 5273 Angiosperm View MSA
122368709 5261 Brassicaceae View MSA
123799636 5264 Brassicales-Malvales View MSA
124297136 5266 SBM View MSA
124149102 5268 Malvidae View MSA
123874975 5270 Rosid View MSA
123458870 5271 Pentapetalae View MSA
122494268 5272 Eudicot View MSA
120783905 5274 Embryophyte View MSA
123428838 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.077        
cufflinks 1.502       Low
cufflinks 3.946       High
cufflinks 1.693        
cufflinks 2.487        
cufflinks 2.704        

0 Strain