Gene : SYN4 A. thaliana TAIR10
Primary Identifier:  ? AT5G16270 Defline:  (1 of 1) PTHR12585//PTHR12585:SF29 - SCC1 / RAD21 FAMILY MEMBER // FI11703P
Genomic Order:  1528 Name:  ? AT5G16270
Secondary Identifier:  ? PAC:19672952
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16270 0.5kb upstream 0.5kb upstream 6898 true Chr5: 5315799-5322696 Arabidopsis thaliana
AT5G16270 0.5kb upstream 0.5kb upstream 500 false Chr5: 5315799-5316298 Arabidopsis thaliana
AT5G16270 0.5kb downstream 0.5kb downstream 6898 true Chr5: 5316299-5323196 Arabidopsis thaliana
AT5G16270 0.5kb downstream 0.5kb downstream 500 false Chr5: 5322697-5323196 Arabidopsis thaliana
AT5G16270 1.0kb upstream 1.0kb upstream 7398 true Chr5: 5315299-5322696 Arabidopsis thaliana
AT5G16270 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5315299-5316298 Arabidopsis thaliana
AT5G16270 1.0kb downstream 1.0kb downstream 7398 true Chr5: 5316299-5323696 Arabidopsis thaliana
AT5G16270 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5322697-5323696 Arabidopsis thaliana
AT5G16270 2.0kb upstream 2.0kb upstream 8398 true Chr5: 5314299-5322696 Arabidopsis thaliana
AT5G16270 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5314299-5316298 Arabidopsis thaliana
AT5G16270 2.0kb downstream 2.0kb downstream 8398 true Chr5: 5316299-5324696 Arabidopsis thaliana
AT5G16270 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5322697-5324696 Arabidopsis thaliana
AT5G16270 5.0kb upstream 5.0kb upstream 11398 true Chr5: 5311299-5322696 Arabidopsis thaliana
AT5G16270 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5311299-5316298 Arabidopsis thaliana
AT5G16270 5.0kb downstream 5.0kb downstream 11398 true Chr5: 5316299-5327696 Arabidopsis thaliana
AT5G16270 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5322697-5327696 Arabidopsis thaliana
AT5G16270 10.0kb upstream 10.0kb upstream 16398 true Chr5: 5306299-5322696 Arabidopsis thaliana
AT5G16270 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5306299-5316298 Arabidopsis thaliana
AT5G16270 10.0kb downstream 10.0kb downstream 16398 true Chr5: 5316299-5332696 Arabidopsis thaliana
AT5G16270 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5322697-5332696 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041403 5273 Angiosperm View MSA
122361754 5261 Brassicaceae View MSA
123840582 5264 Brassicales-Malvales View MSA
124336542 5266 SBM View MSA
124243973 5268 Malvidae View MSA
124062018 5270 Rosid View MSA
123743671 5271 Pentapetalae View MSA
122795053 5272 Eudicot View MSA
121349590 5274 Embryophyte View MSA
123426470 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.041        
cufflinks 15.92        
cufflinks 10.836       Low
cufflinks 17.193        
cufflinks 10.709       Low
cufflinks 16.627        

0 Strain