Gene : AT5G16070 A. thaliana TAIR10
Defline:  (1 of 2) K09498 - T-complex protein 1 subunit zeta (CCT6) Genomic Order:  1508
Name:  ? AT5G16070 Secondary Identifier:  ? PAC:19672479
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16070 0.5kb upstream 0.5kb upstream 4326 true Chr5: 5247354-5251679 Arabidopsis thaliana
AT5G16070 0.5kb upstream 0.5kb upstream 500 false Chr5: 5251180-5251679 Arabidopsis thaliana
AT5G16070 0.5kb downstream 0.5kb downstream 4326 true Chr5: 5246854-5251179 Arabidopsis thaliana
AT5G16070 0.5kb downstream 0.5kb downstream 500 false Chr5: 5246854-5247353 Arabidopsis thaliana
AT5G16070 1.0kb upstream 1.0kb upstream 4826 true Chr5: 5247354-5252179 Arabidopsis thaliana
AT5G16070 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5251180-5252179 Arabidopsis thaliana
AT5G16070 1.0kb downstream 1.0kb downstream 4826 true Chr5: 5246354-5251179 Arabidopsis thaliana
AT5G16070 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5246354-5247353 Arabidopsis thaliana
AT5G16070 2.0kb upstream 2.0kb upstream 5826 true Chr5: 5247354-5253179 Arabidopsis thaliana
AT5G16070 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5251180-5253179 Arabidopsis thaliana
AT5G16070 2.0kb downstream 2.0kb downstream 5826 true Chr5: 5245354-5251179 Arabidopsis thaliana
AT5G16070 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5245354-5247353 Arabidopsis thaliana
AT5G16070 5.0kb upstream 5.0kb upstream 8826 true Chr5: 5247354-5256179 Arabidopsis thaliana
AT5G16070 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5251180-5256179 Arabidopsis thaliana
AT5G16070 5.0kb downstream 5.0kb downstream 8826 true Chr5: 5242354-5251179 Arabidopsis thaliana
AT5G16070 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5242354-5247353 Arabidopsis thaliana
AT5G16070 10.0kb upstream 10.0kb upstream 13826 true Chr5: 5247354-5261179 Arabidopsis thaliana
AT5G16070 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5251180-5261179 Arabidopsis thaliana
AT5G16070 10.0kb downstream 10.0kb downstream 13826 true Chr5: 5237354-5251179 Arabidopsis thaliana
AT5G16070 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5237354-5247353 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338353 5261 Brassicaceae View MSA
123778939 5264 Brassicales-Malvales View MSA
124277273 5266 SBM View MSA
124132490 5268 Malvidae View MSA
124066156 5270 Rosid View MSA
123744812 5271 Pentapetalae View MSA
122790863 5272 Eudicot View MSA
122045313 5273 Angiosperm View MSA
121344896 5274 Embryophyte View MSA
123424625 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.455        
cufflinks 24.979        
cufflinks 14.945        
cufflinks 26.942        
cufflinks 13.949       Low
cufflinks 27.276       High

0 Strain