Gene : COL1 A. thaliana TAIR10
Primary Identifier:  ? AT5G15850 Defline:  (1 of 3) PTHR31319//PTHR31319:SF10 - FAMILY NOT NAMED // ZINC FINGER PROTEIN CONSTANS-RELATED
Genomic Order:  1484 Name:  ? AT5G15850
Secondary Identifier:  ? PAC:19669565
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15850 0.5kb upstream 0.5kb upstream 2307 true Chr5: 5176091-5178397 Arabidopsis thaliana
AT5G15850 0.5kb upstream 0.5kb upstream 500 false Chr5: 5177898-5178397 Arabidopsis thaliana
AT5G15850 0.5kb downstream 0.5kb downstream 2307 true Chr5: 5175591-5177897 Arabidopsis thaliana
AT5G15850 0.5kb downstream 0.5kb downstream 500 false Chr5: 5175591-5176090 Arabidopsis thaliana
AT5G15850 1.0kb upstream 1.0kb upstream 2807 true Chr5: 5176091-5178897 Arabidopsis thaliana
AT5G15850 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5177898-5178897 Arabidopsis thaliana
AT5G15850 1.0kb downstream 1.0kb downstream 2807 true Chr5: 5175091-5177897 Arabidopsis thaliana
AT5G15850 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5175091-5176090 Arabidopsis thaliana
AT5G15850 2.0kb upstream 2.0kb upstream 3807 true Chr5: 5176091-5179897 Arabidopsis thaliana
AT5G15850 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5177898-5179897 Arabidopsis thaliana
AT5G15850 2.0kb downstream 2.0kb downstream 3807 true Chr5: 5174091-5177897 Arabidopsis thaliana
AT5G15850 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5174091-5176090 Arabidopsis thaliana
AT5G15850 5.0kb upstream 5.0kb upstream 6807 true Chr5: 5176091-5182897 Arabidopsis thaliana
AT5G15850 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5177898-5182897 Arabidopsis thaliana
AT5G15850 5.0kb downstream 5.0kb downstream 6807 true Chr5: 5171091-5177897 Arabidopsis thaliana
AT5G15850 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5171091-5176090 Arabidopsis thaliana
AT5G15850 10.0kb upstream 10.0kb upstream 11807 true Chr5: 5176091-5187897 Arabidopsis thaliana
AT5G15850 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5177898-5187897 Arabidopsis thaliana
AT5G15850 10.0kb downstream 10.0kb downstream 11807 true Chr5: 5166091-5177897 Arabidopsis thaliana
AT5G15850 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5166091-5176090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366006 5261 Brassicaceae View MSA
123839284 5264 Brassicales-Malvales View MSA
124343070 5266 SBM View MSA
124240567 5268 Malvidae View MSA
124065921 5270 Rosid View MSA
123752107 5271 Pentapetalae View MSA
122792098 5272 Eudicot View MSA
122049836 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121345556 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.545        
cufflinks 0.042     Low  
cufflinks 5.557        
cufflinks 0.142     Low  
cufflinks 13.448       High
cufflinks 0.008     Low Low

0 Strain