Gene : AT5G18820 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11353//PTHR11353:SF99 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC Genomic Order:  1804
Name:  ? AT5G18820 Secondary Identifier:  ? PAC:19671048
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18820 0.5kb upstream 0.5kb upstream 3339 true Chr5: 6270989-6274327 Arabidopsis thaliana
AT5G18820 0.5kb upstream 0.5kb upstream 500 false Chr5: 6270989-6271488 Arabidopsis thaliana
AT5G18820 0.5kb downstream 0.5kb downstream 3339 true Chr5: 6271489-6274827 Arabidopsis thaliana
AT5G18820 0.5kb downstream 0.5kb downstream 500 false Chr5: 6274328-6274827 Arabidopsis thaliana
AT5G18820 1.0kb upstream 1.0kb upstream 3839 true Chr5: 6270489-6274327 Arabidopsis thaliana
AT5G18820 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6270489-6271488 Arabidopsis thaliana
AT5G18820 1.0kb downstream 1.0kb downstream 3839 true Chr5: 6271489-6275327 Arabidopsis thaliana
AT5G18820 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6274328-6275327 Arabidopsis thaliana
AT5G18820 2.0kb upstream 2.0kb upstream 4839 true Chr5: 6269489-6274327 Arabidopsis thaliana
AT5G18820 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6269489-6271488 Arabidopsis thaliana
AT5G18820 2.0kb downstream 2.0kb downstream 4839 true Chr5: 6271489-6276327 Arabidopsis thaliana
AT5G18820 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6274328-6276327 Arabidopsis thaliana
AT5G18820 5.0kb upstream 5.0kb upstream 7839 true Chr5: 6266489-6274327 Arabidopsis thaliana
AT5G18820 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6266489-6271488 Arabidopsis thaliana
AT5G18820 5.0kb downstream 5.0kb downstream 7839 true Chr5: 6271489-6279327 Arabidopsis thaliana
AT5G18820 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6274328-6279327 Arabidopsis thaliana
AT5G18820 10.0kb upstream 10.0kb upstream 12839 true Chr5: 6261489-6274327 Arabidopsis thaliana
AT5G18820 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6261489-6271488 Arabidopsis thaliana
AT5G18820 10.0kb downstream 10.0kb downstream 12839 true Chr5: 6271489-6284327 Arabidopsis thaliana
AT5G18820 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6274328-6284327 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369237 5261 Brassicaceae View MSA
123830156 5264 Brassicales-Malvales View MSA
124342128 5266 SBM View MSA
124249848 5268 Malvidae View MSA
124066772 5270 Rosid View MSA
123747305 5271 Pentapetalae View MSA
122795365 5272 Eudicot View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.685       High
cufflinks 2.33        
cufflinks 3.24        
cufflinks 2.475        
cufflinks 3.073        
cufflinks 2.627        

0 Strain