Gene : AT5G18780 A. thaliana TAIR10
Defline:  (1 of 16) PF00646//PF08387 - F-box domain (F-box) // FBD (FBD) Genomic Order:  1800
Name:  ? AT5G18780 Secondary Identifier:  ? PAC:19669152
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18780 0.5kb upstream 0.5kb upstream 2405 true Chr5: 6263770-6266174 Arabidopsis thaliana
AT5G18780 0.5kb upstream 0.5kb upstream 500 false Chr5: 6263770-6264269 Arabidopsis thaliana
AT5G18780 0.5kb downstream 0.5kb downstream 2405 true Chr5: 6264270-6266674 Arabidopsis thaliana
AT5G18780 0.5kb downstream 0.5kb downstream 500 false Chr5: 6266175-6266674 Arabidopsis thaliana
AT5G18780 1.0kb upstream 1.0kb upstream 2905 true Chr5: 6263270-6266174 Arabidopsis thaliana
AT5G18780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6263270-6264269 Arabidopsis thaliana
AT5G18780 1.0kb downstream 1.0kb downstream 2905 true Chr5: 6264270-6267174 Arabidopsis thaliana
AT5G18780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6266175-6267174 Arabidopsis thaliana
AT5G18780 2.0kb upstream 2.0kb upstream 3905 true Chr5: 6262270-6266174 Arabidopsis thaliana
AT5G18780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6262270-6264269 Arabidopsis thaliana
AT5G18780 2.0kb downstream 2.0kb downstream 3905 true Chr5: 6264270-6268174 Arabidopsis thaliana
AT5G18780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6266175-6268174 Arabidopsis thaliana
AT5G18780 5.0kb upstream 5.0kb upstream 6905 true Chr5: 6259270-6266174 Arabidopsis thaliana
AT5G18780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6259270-6264269 Arabidopsis thaliana
AT5G18780 5.0kb downstream 5.0kb downstream 6905 true Chr5: 6264270-6271174 Arabidopsis thaliana
AT5G18780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6266175-6271174 Arabidopsis thaliana
AT5G18780 10.0kb upstream 10.0kb upstream 11905 true Chr5: 6254270-6266174 Arabidopsis thaliana
AT5G18780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6254270-6264269 Arabidopsis thaliana
AT5G18780 10.0kb downstream 10.0kb downstream 11905 true Chr5: 6264270-6276174 Arabidopsis thaliana
AT5G18780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6266175-6276174 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379975 5261 Brassicaceae View MSA
123802503 5264 Brassicales-Malvales View MSA
124299693 5266 SBM View MSA
124151032 5268 Malvidae View MSA
123876550 5270 Rosid View MSA
123753592 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.482        
cufflinks 6.899        
cufflinks 2.068       Low
cufflinks 7.399        
cufflinks 3.164        
cufflinks 5.982        

0 Strain