Gene : AT5G18550 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12506:SF27 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34-RELATED Genomic Order:  1774
Name:  ? AT5G18550 Secondary Identifier:  ? PAC:19670033
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18550 0.5kb upstream 0.5kb upstream 3453 true Chr5: 6159678-6163130 Arabidopsis thaliana
AT5G18550 0.5kb upstream 0.5kb upstream 500 false Chr5: 6159678-6160177 Arabidopsis thaliana
AT5G18550 0.5kb downstream 0.5kb downstream 3453 true Chr5: 6160178-6163630 Arabidopsis thaliana
AT5G18550 0.5kb downstream 0.5kb downstream 500 false Chr5: 6163131-6163630 Arabidopsis thaliana
AT5G18550 1.0kb upstream 1.0kb upstream 3953 true Chr5: 6159178-6163130 Arabidopsis thaliana
AT5G18550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6159178-6160177 Arabidopsis thaliana
AT5G18550 1.0kb downstream 1.0kb downstream 3953 true Chr5: 6160178-6164130 Arabidopsis thaliana
AT5G18550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6163131-6164130 Arabidopsis thaliana
AT5G18550 2.0kb upstream 2.0kb upstream 4953 true Chr5: 6158178-6163130 Arabidopsis thaliana
AT5G18550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6158178-6160177 Arabidopsis thaliana
AT5G18550 2.0kb downstream 2.0kb downstream 4953 true Chr5: 6160178-6165130 Arabidopsis thaliana
AT5G18550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6163131-6165130 Arabidopsis thaliana
AT5G18550 5.0kb upstream 5.0kb upstream 7953 true Chr5: 6155178-6163130 Arabidopsis thaliana
AT5G18550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6155178-6160177 Arabidopsis thaliana
AT5G18550 5.0kb downstream 5.0kb downstream 7953 true Chr5: 6160178-6168130 Arabidopsis thaliana
AT5G18550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6163131-6168130 Arabidopsis thaliana
AT5G18550 10.0kb upstream 10.0kb upstream 12953 true Chr5: 6150178-6163130 Arabidopsis thaliana
AT5G18550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6150178-6160177 Arabidopsis thaliana
AT5G18550 10.0kb downstream 10.0kb downstream 12953 true Chr5: 6160178-6173130 Arabidopsis thaliana
AT5G18550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6163131-6173130 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366531 5261 Brassicaceae View MSA
123836159 5264 Brassicales-Malvales View MSA
124338324 5266 SBM View MSA
124244346 5268 Malvidae View MSA
124065869 5270 Rosid View MSA
123744016 5271 Pentapetalae View MSA
122797715 5272 Eudicot View MSA
122047734 5273 Angiosperm View MSA
121348027 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.393        
cufflinks 17.351       High
cufflinks 6.362        
cufflinks 14.304        
cufflinks 6.525        
cufflinks 16.433        

0 Strain