Gene : AT5G18440 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13309 - NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 Genomic Order:  1762
Name:  ? AT5G18440 Secondary Identifier:  ? PAC:19672284
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18440 0.5kb upstream 0.5kb upstream 3583 true Chr5: 6112350-6115932 Arabidopsis thaliana
AT5G18440 0.5kb upstream 0.5kb upstream 500 false Chr5: 6112350-6112849 Arabidopsis thaliana
AT5G18440 0.5kb downstream 0.5kb downstream 3583 true Chr5: 6112850-6116432 Arabidopsis thaliana
AT5G18440 0.5kb downstream 0.5kb downstream 500 false Chr5: 6115933-6116432 Arabidopsis thaliana
AT5G18440 1.0kb upstream 1.0kb upstream 4083 true Chr5: 6111850-6115932 Arabidopsis thaliana
AT5G18440 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6111850-6112849 Arabidopsis thaliana
AT5G18440 1.0kb downstream 1.0kb downstream 4083 true Chr5: 6112850-6116932 Arabidopsis thaliana
AT5G18440 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6115933-6116932 Arabidopsis thaliana
AT5G18440 2.0kb upstream 2.0kb upstream 5083 true Chr5: 6110850-6115932 Arabidopsis thaliana
AT5G18440 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6110850-6112849 Arabidopsis thaliana
AT5G18440 2.0kb downstream 2.0kb downstream 5083 true Chr5: 6112850-6117932 Arabidopsis thaliana
AT5G18440 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6115933-6117932 Arabidopsis thaliana
AT5G18440 5.0kb upstream 5.0kb upstream 8083 true Chr5: 6107850-6115932 Arabidopsis thaliana
AT5G18440 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6107850-6112849 Arabidopsis thaliana
AT5G18440 5.0kb downstream 5.0kb downstream 8083 true Chr5: 6112850-6120932 Arabidopsis thaliana
AT5G18440 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6115933-6120932 Arabidopsis thaliana
AT5G18440 10.0kb upstream 10.0kb upstream 13083 true Chr5: 6102850-6115932 Arabidopsis thaliana
AT5G18440 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6102850-6112849 Arabidopsis thaliana
AT5G18440 10.0kb downstream 10.0kb downstream 13083 true Chr5: 6112850-6125932 Arabidopsis thaliana
AT5G18440 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6115933-6125932 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361484 5261 Brassicaceae View MSA
123829474 5264 Brassicales-Malvales View MSA
124336876 5266 SBM View MSA
124244086 5268 Malvidae View MSA
124063350 5270 Rosid View MSA
123737690 5271 Pentapetalae View MSA
122793852 5272 Eudicot View MSA
122042641 5273 Angiosperm View MSA
121348724 5274 Embryophyte View MSA
123425996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.58        
cufflinks 2.874       High
cufflinks 2.42        
cufflinks 2.506        
cufflinks 2.153       Low
cufflinks 2.743        

0 Strain