Gene : AT5G18475 A. thaliana TAIR10
Defline:  (1 of 10) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1766
Name:  ? AT5G18475 Secondary Identifier:  ? PAC:19669572
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18475 0.5kb upstream 0.5kb upstream 2279 true Chr5: 6129237-6131515 Arabidopsis thaliana
AT5G18475 0.5kb upstream 0.5kb upstream 500 false Chr5: 6131016-6131515 Arabidopsis thaliana
AT5G18475 0.5kb downstream 0.5kb downstream 2279 true Chr5: 6128737-6131015 Arabidopsis thaliana
AT5G18475 0.5kb downstream 0.5kb downstream 500 false Chr5: 6128737-6129236 Arabidopsis thaliana
AT5G18475 1.0kb upstream 1.0kb upstream 2779 true Chr5: 6129237-6132015 Arabidopsis thaliana
AT5G18475 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6131016-6132015 Arabidopsis thaliana
AT5G18475 1.0kb downstream 1.0kb downstream 2779 true Chr5: 6128237-6131015 Arabidopsis thaliana
AT5G18475 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6128237-6129236 Arabidopsis thaliana
AT5G18475 2.0kb upstream 2.0kb upstream 3779 true Chr5: 6129237-6133015 Arabidopsis thaliana
AT5G18475 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6131016-6133015 Arabidopsis thaliana
AT5G18475 2.0kb downstream 2.0kb downstream 3779 true Chr5: 6127237-6131015 Arabidopsis thaliana
AT5G18475 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6127237-6129236 Arabidopsis thaliana
AT5G18475 5.0kb upstream 5.0kb upstream 6779 true Chr5: 6129237-6136015 Arabidopsis thaliana
AT5G18475 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6131016-6136015 Arabidopsis thaliana
AT5G18475 5.0kb downstream 5.0kb downstream 6779 true Chr5: 6124237-6131015 Arabidopsis thaliana
AT5G18475 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6124237-6129236 Arabidopsis thaliana
AT5G18475 10.0kb upstream 10.0kb upstream 11779 true Chr5: 6129237-6141015 Arabidopsis thaliana
AT5G18475 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6131016-6141015 Arabidopsis thaliana
AT5G18475 10.0kb downstream 10.0kb downstream 11779 true Chr5: 6119237-6131015 Arabidopsis thaliana
AT5G18475 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6119237-6129236 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373682 5261 Brassicaceae View MSA
123831057 5264 Brassicales-Malvales View MSA
124338046 5266 SBM View MSA
124252725 5268 Malvidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.992        
cufflinks 3.058       High
cufflinks 1.744       Low
cufflinks 2.261        
cufflinks 2.124        
cufflinks 2.748        

0 Strain