Gene : CSD3 A. thaliana TAIR10
Primary Identifier:  ? AT5G18100 Defline:  (1 of 1) PTHR10003//PTHR10003:SF31 - SUPEROXIDE DISMUTASE CU-ZN -RELATED // SUPEROXIDE DISMUTASE [CU-ZN] 3
Genomic Order:  1724 Name:  ? AT5G18100
Secondary Identifier:  ? PAC:19666591
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana DETOX1-PWY Arabidopsis thaliana pathologic  
Athaliana DETOX1-PWY-1 Arabidopsis thaliana pathologic  
Athaliana PWY-6854 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18100 0.5kb upstream 0.5kb upstream 2199 true Chr5: 5986687-5988885 Arabidopsis thaliana
AT5G18100 0.5kb upstream 0.5kb upstream 500 false Chr5: 5986687-5987186 Arabidopsis thaliana
AT5G18100 0.5kb downstream 0.5kb downstream 2199 true Chr5: 5987187-5989385 Arabidopsis thaliana
AT5G18100 0.5kb downstream 0.5kb downstream 500 false Chr5: 5988886-5989385 Arabidopsis thaliana
AT5G18100 1.0kb upstream 1.0kb upstream 2699 true Chr5: 5986187-5988885 Arabidopsis thaliana
AT5G18100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5986187-5987186 Arabidopsis thaliana
AT5G18100 1.0kb downstream 1.0kb downstream 2699 true Chr5: 5987187-5989885 Arabidopsis thaliana
AT5G18100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5988886-5989885 Arabidopsis thaliana
AT5G18100 2.0kb upstream 2.0kb upstream 3699 true Chr5: 5985187-5988885 Arabidopsis thaliana
AT5G18100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5985187-5987186 Arabidopsis thaliana
AT5G18100 2.0kb downstream 2.0kb downstream 3699 true Chr5: 5987187-5990885 Arabidopsis thaliana
AT5G18100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5988886-5990885 Arabidopsis thaliana
AT5G18100 5.0kb upstream 5.0kb upstream 6699 true Chr5: 5982187-5988885 Arabidopsis thaliana
AT5G18100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5982187-5987186 Arabidopsis thaliana
AT5G18100 5.0kb downstream 5.0kb downstream 6699 true Chr5: 5987187-5993885 Arabidopsis thaliana
AT5G18100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5988886-5993885 Arabidopsis thaliana
AT5G18100 10.0kb upstream 10.0kb upstream 11699 true Chr5: 5977187-5988885 Arabidopsis thaliana
AT5G18100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5977187-5987186 Arabidopsis thaliana
AT5G18100 10.0kb downstream 10.0kb downstream 11699 true Chr5: 5987187-5998885 Arabidopsis thaliana
AT5G18100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5988886-5998885 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374429 5261 Brassicaceae View MSA
123834342 5264 Brassicales-Malvales View MSA
124349995 5266 SBM View MSA
124244672 5268 Malvidae View MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.72        
cufflinks 8.306        
cufflinks 10.678       High
cufflinks 8.124        
cufflinks 9.581        
cufflinks 7.247       Low

0 Strain