Gene : VDD A. thaliana TAIR10
Primary Identifier:  ? AT5G18000 Defline:  (1 of 7) PTHR31920//PTHR31920:SF20 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING PROTEIN REM23
Genomic Order:  1712 Name:  ? AT5G18000
Secondary Identifier:  ? PAC:19671021
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18000 0.5kb upstream 0.5kb upstream 2243 true Chr5: 5959900-5962142 Arabidopsis thaliana
AT5G18000 0.5kb upstream 0.5kb upstream 500 false Chr5: 5961643-5962142 Arabidopsis thaliana
AT5G18000 0.5kb downstream 0.5kb downstream 2243 true Chr5: 5959400-5961642 Arabidopsis thaliana
AT5G18000 0.5kb downstream 0.5kb downstream 500 false Chr5: 5959400-5959899 Arabidopsis thaliana
AT5G18000 1.0kb upstream 1.0kb upstream 2743 true Chr5: 5959900-5962642 Arabidopsis thaliana
AT5G18000 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5961643-5962642 Arabidopsis thaliana
AT5G18000 1.0kb downstream 1.0kb downstream 2743 true Chr5: 5958900-5961642 Arabidopsis thaliana
AT5G18000 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5958900-5959899 Arabidopsis thaliana
AT5G18000 2.0kb upstream 2.0kb upstream 3743 true Chr5: 5959900-5963642 Arabidopsis thaliana
AT5G18000 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5961643-5963642 Arabidopsis thaliana
AT5G18000 2.0kb downstream 2.0kb downstream 3743 true Chr5: 5957900-5961642 Arabidopsis thaliana
AT5G18000 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5957900-5959899 Arabidopsis thaliana
AT5G18000 5.0kb upstream 5.0kb upstream 6743 true Chr5: 5959900-5966642 Arabidopsis thaliana
AT5G18000 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5961643-5966642 Arabidopsis thaliana
AT5G18000 5.0kb downstream 5.0kb downstream 6743 true Chr5: 5954900-5961642 Arabidopsis thaliana
AT5G18000 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5954900-5959899 Arabidopsis thaliana
AT5G18000 10.0kb upstream 10.0kb upstream 11743 true Chr5: 5959900-5971642 Arabidopsis thaliana
AT5G18000 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5961643-5971642 Arabidopsis thaliana
AT5G18000 10.0kb downstream 10.0kb downstream 11743 true Chr5: 5949900-5961642 Arabidopsis thaliana
AT5G18000 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5949900-5959899 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379207 5261 Brassicaceae View MSA
123841668 5264 Brassicales-Malvales View MSA
124350666 5266 SBM View MSA
124254086 5268 Malvidae View MSA
124073823 5270 Rosid View MSA
123753418 5271 Pentapetalae View MSA
122797829 5272 Eudicot View MSA
122050133 5273 Angiosperm View MSA
121350826 5274 Embryophyte View MSA
123427153 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.067     Low  
cufflinks 0.211     Low  
cufflinks 0.025     Low Low
cufflinks 0.169     Low  
cufflinks 0.091     Low  
cufflinks 0.554       High

0 Strain