Gene : AT5G17820 A. thaliana TAIR10
Defline:  (1 of 78) 1.11.1.7 - Peroxidase / Lactoperoxidase Genomic Order:  1694
Name:  ? AT5G17820 Secondary Identifier:  ? PAC:19666464
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  
Athaliana PWY-7214 Arabidopsis thaliana pathologic  
Athaliana PWY-7445 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G17820 0.5kb upstream 0.5kb upstream 2788 true Chr5: 5887906-5890693 Arabidopsis thaliana
AT5G17820 0.5kb upstream 0.5kb upstream 500 false Chr5: 5890194-5890693 Arabidopsis thaliana
AT5G17820 0.5kb downstream 0.5kb downstream 2788 true Chr5: 5887406-5890193 Arabidopsis thaliana
AT5G17820 0.5kb downstream 0.5kb downstream 500 false Chr5: 5887406-5887905 Arabidopsis thaliana
AT5G17820 1.0kb upstream 1.0kb upstream 3288 true Chr5: 5887906-5891193 Arabidopsis thaliana
AT5G17820 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5890194-5891193 Arabidopsis thaliana
AT5G17820 1.0kb downstream 1.0kb downstream 3288 true Chr5: 5886906-5890193 Arabidopsis thaliana
AT5G17820 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5886906-5887905 Arabidopsis thaliana
AT5G17820 2.0kb upstream 2.0kb upstream 4288 true Chr5: 5887906-5892193 Arabidopsis thaliana
AT5G17820 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5890194-5892193 Arabidopsis thaliana
AT5G17820 2.0kb downstream 2.0kb downstream 4288 true Chr5: 5885906-5890193 Arabidopsis thaliana
AT5G17820 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5885906-5887905 Arabidopsis thaliana
AT5G17820 5.0kb upstream 5.0kb upstream 7288 true Chr5: 5887906-5895193 Arabidopsis thaliana
AT5G17820 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5890194-5895193 Arabidopsis thaliana
AT5G17820 5.0kb downstream 5.0kb downstream 7288 true Chr5: 5882906-5890193 Arabidopsis thaliana
AT5G17820 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5882906-5887905 Arabidopsis thaliana
AT5G17820 10.0kb upstream 10.0kb upstream 12288 true Chr5: 5887906-5900193 Arabidopsis thaliana
AT5G17820 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5890194-5900193 Arabidopsis thaliana
AT5G17820 10.0kb downstream 10.0kb downstream 12288 true Chr5: 5877906-5890193 Arabidopsis thaliana
AT5G17820 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5877906-5887905 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373826 5261 Brassicaceae View MSA
123836996 5264 Brassicales-Malvales View MSA
124350578 5266 SBM View MSA
124246805 5268 Malvidae View MSA
124051258 5270 Rosid View MSA
123745687 5271 Pentapetalae View MSA
122794580 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.061        
cufflinks 0.006     Low Low
cufflinks 4.314        
cufflinks 0.007     Low Low
cufflinks 8.684        

0 Strain