Gene : AT5G17660 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23417//PTHR23417:SF18 - 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1677
Name:  ? AT5G17660 Secondary Identifier:  ? PAC:19667362
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G17660 0.5kb upstream 0.5kb upstream 2817 true Chr5: 5818548-5821364 Arabidopsis thaliana
AT5G17660 0.5kb upstream 0.5kb upstream 500 false Chr5: 5820865-5821364 Arabidopsis thaliana
AT5G17660 0.5kb downstream 0.5kb downstream 2817 true Chr5: 5818048-5820864 Arabidopsis thaliana
AT5G17660 0.5kb downstream 0.5kb downstream 500 false Chr5: 5818048-5818547 Arabidopsis thaliana
AT5G17660 1.0kb upstream 1.0kb upstream 3317 true Chr5: 5818548-5821864 Arabidopsis thaliana
AT5G17660 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5820865-5821864 Arabidopsis thaliana
AT5G17660 1.0kb downstream 1.0kb downstream 3317 true Chr5: 5817548-5820864 Arabidopsis thaliana
AT5G17660 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5817548-5818547 Arabidopsis thaliana
AT5G17660 2.0kb upstream 2.0kb upstream 4317 true Chr5: 5818548-5822864 Arabidopsis thaliana
AT5G17660 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5820865-5822864 Arabidopsis thaliana
AT5G17660 2.0kb downstream 2.0kb downstream 4317 true Chr5: 5816548-5820864 Arabidopsis thaliana
AT5G17660 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5816548-5818547 Arabidopsis thaliana
AT5G17660 5.0kb upstream 5.0kb upstream 7317 true Chr5: 5818548-5825864 Arabidopsis thaliana
AT5G17660 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5820865-5825864 Arabidopsis thaliana
AT5G17660 5.0kb downstream 5.0kb downstream 7317 true Chr5: 5813548-5820864 Arabidopsis thaliana
AT5G17660 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5813548-5818547 Arabidopsis thaliana
AT5G17660 10.0kb upstream 10.0kb upstream 12317 true Chr5: 5818548-5830864 Arabidopsis thaliana
AT5G17660 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5820865-5830864 Arabidopsis thaliana
AT5G17660 10.0kb downstream 10.0kb downstream 12317 true Chr5: 5808548-5820864 Arabidopsis thaliana
AT5G17660 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5808548-5818547 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375278 5261 Brassicaceae View MSA
123834548 5264 Brassicales-Malvales View MSA
124341585 5266 SBM View MSA
124239707 5268 Malvidae View MSA
124068374 5270 Rosid View MSA
123739986 5271 Pentapetalae View MSA
122793560 5272 Eudicot View MSA
122047983 5273 Angiosperm View MSA
121345324 5274 Embryophyte View MSA
123425871 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.53        
cufflinks 3.687        
cufflinks 4.962       High
cufflinks 3.495       Low
cufflinks 4.88       High
cufflinks 3.544        

0 Strain