Gene : AT5G20600 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13026 - NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 Genomic Order:  1995
Name:  ? AT5G20600 Secondary Identifier:  ? PAC:19665358
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20600 0.5kb upstream 0.5kb upstream 2356 true Chr5: 6966178-6968533 Arabidopsis thaliana
AT5G20600 0.5kb upstream 0.5kb upstream 500 false Chr5: 6968034-6968533 Arabidopsis thaliana
AT5G20600 0.5kb downstream 0.5kb downstream 2356 true Chr5: 6965678-6968033 Arabidopsis thaliana
AT5G20600 0.5kb downstream 0.5kb downstream 500 false Chr5: 6965678-6966177 Arabidopsis thaliana
AT5G20600 1.0kb upstream 1.0kb upstream 2856 true Chr5: 6966178-6969033 Arabidopsis thaliana
AT5G20600 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6968034-6969033 Arabidopsis thaliana
AT5G20600 1.0kb downstream 1.0kb downstream 2856 true Chr5: 6965178-6968033 Arabidopsis thaliana
AT5G20600 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6965178-6966177 Arabidopsis thaliana
AT5G20600 2.0kb upstream 2.0kb upstream 3856 true Chr5: 6966178-6970033 Arabidopsis thaliana
AT5G20600 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6968034-6970033 Arabidopsis thaliana
AT5G20600 2.0kb downstream 2.0kb downstream 3856 true Chr5: 6964178-6968033 Arabidopsis thaliana
AT5G20600 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6964178-6966177 Arabidopsis thaliana
AT5G20600 5.0kb upstream 5.0kb upstream 6856 true Chr5: 6966178-6973033 Arabidopsis thaliana
AT5G20600 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6968034-6973033 Arabidopsis thaliana
AT5G20600 5.0kb downstream 5.0kb downstream 6856 true Chr5: 6961178-6968033 Arabidopsis thaliana
AT5G20600 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6961178-6966177 Arabidopsis thaliana
AT5G20600 10.0kb upstream 10.0kb upstream 11856 true Chr5: 6966178-6978033 Arabidopsis thaliana
AT5G20600 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6968034-6978033 Arabidopsis thaliana
AT5G20600 10.0kb downstream 10.0kb downstream 11856 true Chr5: 6956178-6968033 Arabidopsis thaliana
AT5G20600 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6956178-6966177 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041241 5273 Angiosperm View MSA
122370665 5261 Brassicaceae View MSA
123836326 5264 Brassicales-Malvales View MSA
124345849 5266 SBM View MSA
124244164 5268 Malvidae View MSA
124064364 5270 Rosid View MSA
123737116 5271 Pentapetalae View MSA
122788031 5272 Eudicot View MSA
121344172 5274 Embryophyte View MSA
123424078 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.394        
cufflinks 25.67        
cufflinks 13.993        
cufflinks 24.821        
cufflinks 12.295       Low
cufflinks 27.491       High

0 Strain