Gene : AT5G20160 A. thaliana TAIR10
Defline:  (1 of 3) K12845 - U4/U6 small nuclear ribonucleoprotein SNU13 (SNU13, NHP2L) Genomic Order:  1950
Name:  ? AT5G20160 Secondary Identifier:  ? PAC:19667312
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20160 0.5kb upstream 0.5kb upstream 1920 true Chr5: 6803782-6805701 Arabidopsis thaliana
AT5G20160 0.5kb upstream 0.5kb upstream 500 false Chr5: 6805202-6805701 Arabidopsis thaliana
AT5G20160 0.5kb downstream 0.5kb downstream 1920 true Chr5: 6803282-6805201 Arabidopsis thaliana
AT5G20160 0.5kb downstream 0.5kb downstream 500 false Chr5: 6803282-6803781 Arabidopsis thaliana
AT5G20160 1.0kb upstream 1.0kb upstream 2420 true Chr5: 6803782-6806201 Arabidopsis thaliana
AT5G20160 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6805202-6806201 Arabidopsis thaliana
AT5G20160 1.0kb downstream 1.0kb downstream 2420 true Chr5: 6802782-6805201 Arabidopsis thaliana
AT5G20160 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6802782-6803781 Arabidopsis thaliana
AT5G20160 2.0kb upstream 2.0kb upstream 3420 true Chr5: 6803782-6807201 Arabidopsis thaliana
AT5G20160 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6805202-6807201 Arabidopsis thaliana
AT5G20160 2.0kb downstream 2.0kb downstream 3420 true Chr5: 6801782-6805201 Arabidopsis thaliana
AT5G20160 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6801782-6803781 Arabidopsis thaliana
AT5G20160 5.0kb upstream 5.0kb upstream 6420 true Chr5: 6803782-6810201 Arabidopsis thaliana
AT5G20160 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6805202-6810201 Arabidopsis thaliana
AT5G20160 5.0kb downstream 5.0kb downstream 6420 true Chr5: 6798782-6805201 Arabidopsis thaliana
AT5G20160 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6798782-6803781 Arabidopsis thaliana
AT5G20160 10.0kb upstream 10.0kb upstream 11420 true Chr5: 6803782-6815201 Arabidopsis thaliana
AT5G20160 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6805202-6815201 Arabidopsis thaliana
AT5G20160 10.0kb downstream 10.0kb downstream 11420 true Chr5: 6793782-6805201 Arabidopsis thaliana
AT5G20160 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6793782-6803781 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121525266 5273 Angiosperm View MSA
122331045 5261 Brassicaceae Singleton cluster - no MSA
123837417 5264 Brassicales-Malvales View MSA
124322302 5266 SBM View MSA
124169113 5268 Malvidae View MSA
123892264 5270 Rosid View MSA
123474446 5271 Pentapetalae View MSA
122509721 5272 Eudicot View MSA
120798035 5274 Embryophyte View MSA
122839597 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.258        
cufflinks 21.837        
cufflinks 13.826       Low
cufflinks 22.892        
cufflinks 12.697       Low
cufflinks 28.02       High

0 Strain