Gene : AT5G19960 A. thaliana TAIR10
Defline:  (1 of 1) KOG0107//KOG0126//KOG4207 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) // Predicted splicing factor, SR protein superfamily Genomic Order:  1929
Name:  ? AT5G19960 Secondary Identifier:  ? PAC:19671473
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G19960 0.5kb upstream 0.5kb upstream 2914 true Chr5: 6743426-6746339 Arabidopsis thaliana
AT5G19960 0.5kb upstream 0.5kb upstream 500 false Chr5: 6743426-6743925 Arabidopsis thaliana
AT5G19960 0.5kb downstream 0.5kb downstream 2914 true Chr5: 6743926-6746839 Arabidopsis thaliana
AT5G19960 0.5kb downstream 0.5kb downstream 500 false Chr5: 6746340-6746839 Arabidopsis thaliana
AT5G19960 1.0kb upstream 1.0kb upstream 3414 true Chr5: 6742926-6746339 Arabidopsis thaliana
AT5G19960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6742926-6743925 Arabidopsis thaliana
AT5G19960 1.0kb downstream 1.0kb downstream 3414 true Chr5: 6743926-6747339 Arabidopsis thaliana
AT5G19960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6746340-6747339 Arabidopsis thaliana
AT5G19960 2.0kb upstream 2.0kb upstream 4414 true Chr5: 6741926-6746339 Arabidopsis thaliana
AT5G19960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6741926-6743925 Arabidopsis thaliana
AT5G19960 2.0kb downstream 2.0kb downstream 4414 true Chr5: 6743926-6748339 Arabidopsis thaliana
AT5G19960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6746340-6748339 Arabidopsis thaliana
AT5G19960 5.0kb upstream 5.0kb upstream 7414 true Chr5: 6738926-6746339 Arabidopsis thaliana
AT5G19960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6738926-6743925 Arabidopsis thaliana
AT5G19960 5.0kb downstream 5.0kb downstream 7414 true Chr5: 6743926-6751339 Arabidopsis thaliana
AT5G19960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6746340-6751339 Arabidopsis thaliana
AT5G19960 10.0kb upstream 10.0kb upstream 12414 true Chr5: 6733926-6746339 Arabidopsis thaliana
AT5G19960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6733926-6743925 Arabidopsis thaliana
AT5G19960 10.0kb downstream 10.0kb downstream 12414 true Chr5: 6743926-6756339 Arabidopsis thaliana
AT5G19960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6746340-6756339 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041103 5273 Angiosperm View MSA
122369906 5261 Brassicaceae View MSA
123830609 5264 Brassicales-Malvales View MSA
124342058 5266 SBM View MSA
124239979 5268 Malvidae View MSA
124063155 5270 Rosid View MSA
123740739 5271 Pentapetalae View MSA
122788079 5272 Eudicot View MSA
121345808 5274 Embryophyte View MSA
123427736 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.856        
cufflinks 6.197        
cufflinks 4.249       Low
cufflinks 6.634        
cufflinks 4.363       Low
cufflinks 6.456        

0 Strain