Gene : AT5G19480 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22536 - LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN Genomic Order:  1877
Name:  ? AT5G19480 Secondary Identifier:  ? PAC:19666884
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G19480 0.5kb upstream 0.5kb upstream 2525 true Chr5: 6571001-6573525 Arabidopsis thaliana
AT5G19480 0.5kb upstream 0.5kb upstream 500 false Chr5: 6571001-6571500 Arabidopsis thaliana
AT5G19480 0.5kb downstream 0.5kb downstream 2525 true Chr5: 6571501-6574025 Arabidopsis thaliana
AT5G19480 0.5kb downstream 0.5kb downstream 500 false Chr5: 6573526-6574025 Arabidopsis thaliana
AT5G19480 1.0kb upstream 1.0kb upstream 3025 true Chr5: 6570501-6573525 Arabidopsis thaliana
AT5G19480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6570501-6571500 Arabidopsis thaliana
AT5G19480 1.0kb downstream 1.0kb downstream 3025 true Chr5: 6571501-6574525 Arabidopsis thaliana
AT5G19480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6573526-6574525 Arabidopsis thaliana
AT5G19480 2.0kb upstream 2.0kb upstream 4025 true Chr5: 6569501-6573525 Arabidopsis thaliana
AT5G19480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6569501-6571500 Arabidopsis thaliana
AT5G19480 2.0kb downstream 2.0kb downstream 4025 true Chr5: 6571501-6575525 Arabidopsis thaliana
AT5G19480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6573526-6575525 Arabidopsis thaliana
AT5G19480 5.0kb upstream 5.0kb upstream 7025 true Chr5: 6566501-6573525 Arabidopsis thaliana
AT5G19480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6566501-6571500 Arabidopsis thaliana
AT5G19480 5.0kb downstream 5.0kb downstream 7025 true Chr5: 6571501-6578525 Arabidopsis thaliana
AT5G19480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6573526-6578525 Arabidopsis thaliana
AT5G19480 10.0kb upstream 10.0kb upstream 12025 true Chr5: 6561501-6573525 Arabidopsis thaliana
AT5G19480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6561501-6571500 Arabidopsis thaliana
AT5G19480 10.0kb downstream 10.0kb downstream 12025 true Chr5: 6571501-6583525 Arabidopsis thaliana
AT5G19480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6573526-6583525 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371492 5261 Brassicaceae View MSA
123800172 5264 Brassicales-Malvales View MSA
124297617 5266 SBM View MSA
124149456 5268 Malvidae View MSA
124074053 5270 Rosid View MSA
123743720 5271 Pentapetalae View MSA
122789289 5272 Eudicot View MSA
122041858 5273 Angiosperm View MSA
121345817 5274 Embryophyte View MSA
123425736 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.831       Low
cufflinks 4.684       High
cufflinks 4.279        
cufflinks 4.673       High
cufflinks 3.732       Low
cufflinks 4.197        

0 Strain