Gene : EMB1030 A. thaliana TAIR10
Primary Identifier:  ? AT5G22800 Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED
Genomic Order:  2152 Name:  ? AT5G22800
Secondary Identifier:  ? PAC:19671954
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G22800 0.5kb upstream 0.5kb upstream 4409 true Chr5: 7616073-7620481 Arabidopsis thaliana
AT5G22800 0.5kb upstream 0.5kb upstream 500 false Chr5: 7619982-7620481 Arabidopsis thaliana
AT5G22800 0.5kb downstream 0.5kb downstream 4409 true Chr5: 7615573-7619981 Arabidopsis thaliana
AT5G22800 0.5kb downstream 0.5kb downstream 500 false Chr5: 7615573-7616072 Arabidopsis thaliana
AT5G22800 1.0kb upstream 1.0kb upstream 4909 true Chr5: 7616073-7620981 Arabidopsis thaliana
AT5G22800 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7619982-7620981 Arabidopsis thaliana
AT5G22800 1.0kb downstream 1.0kb downstream 4909 true Chr5: 7615073-7619981 Arabidopsis thaliana
AT5G22800 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7615073-7616072 Arabidopsis thaliana
AT5G22800 2.0kb upstream 2.0kb upstream 5909 true Chr5: 7616073-7621981 Arabidopsis thaliana
AT5G22800 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7619982-7621981 Arabidopsis thaliana
AT5G22800 2.0kb downstream 2.0kb downstream 5909 true Chr5: 7614073-7619981 Arabidopsis thaliana
AT5G22800 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7614073-7616072 Arabidopsis thaliana
AT5G22800 5.0kb upstream 5.0kb upstream 8909 true Chr5: 7616073-7624981 Arabidopsis thaliana
AT5G22800 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7619982-7624981 Arabidopsis thaliana
AT5G22800 5.0kb downstream 5.0kb downstream 8909 true Chr5: 7611073-7619981 Arabidopsis thaliana
AT5G22800 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7611073-7616072 Arabidopsis thaliana
AT5G22800 10.0kb upstream 10.0kb upstream 13909 true Chr5: 7616073-7629981 Arabidopsis thaliana
AT5G22800 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7619982-7629981 Arabidopsis thaliana
AT5G22800 10.0kb downstream 10.0kb downstream 13909 true Chr5: 7606073-7619981 Arabidopsis thaliana
AT5G22800 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7606073-7616072 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361504 5261 Brassicaceae View MSA
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.419     High High
cufflinks 2.586        
cufflinks 35.065     High  
cufflinks 2.658        
cufflinks 27.947     High  
cufflinks 2.406        

0 Strain