Gene : HD2B A. thaliana TAIR10
Primary Identifier:  ? AT5G22650 Defline:  (1 of 3) PTHR31802:SF5 - HISTONE DEACETYLASE HDT2-RELATED
Genomic Order:  2136 Name:  ? AT5G22650
Secondary Identifier:  ? PAC:19667528
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Expression

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7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G22650 0.5kb upstream 0.5kb upstream 2757 true Chr5: 7533517-7536273 Arabidopsis thaliana
AT5G22650 0.5kb upstream 0.5kb upstream 500 false Chr5: 7533517-7534016 Arabidopsis thaliana
AT5G22650 0.5kb downstream 0.5kb downstream 2757 true Chr5: 7534017-7536773 Arabidopsis thaliana
AT5G22650 0.5kb downstream 0.5kb downstream 500 false Chr5: 7536274-7536773 Arabidopsis thaliana
AT5G22650 1.0kb upstream 1.0kb upstream 3257 true Chr5: 7533017-7536273 Arabidopsis thaliana
AT5G22650 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7533017-7534016 Arabidopsis thaliana
AT5G22650 1.0kb downstream 1.0kb downstream 3257 true Chr5: 7534017-7537273 Arabidopsis thaliana
AT5G22650 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7536274-7537273 Arabidopsis thaliana
AT5G22650 2.0kb upstream 2.0kb upstream 4257 true Chr5: 7532017-7536273 Arabidopsis thaliana
AT5G22650 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7532017-7534016 Arabidopsis thaliana
AT5G22650 2.0kb downstream 2.0kb downstream 4257 true Chr5: 7534017-7538273 Arabidopsis thaliana
AT5G22650 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7536274-7538273 Arabidopsis thaliana
AT5G22650 5.0kb upstream 5.0kb upstream 7257 true Chr5: 7529017-7536273 Arabidopsis thaliana
AT5G22650 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7529017-7534016 Arabidopsis thaliana
AT5G22650 5.0kb downstream 5.0kb downstream 7257 true Chr5: 7534017-7541273 Arabidopsis thaliana
AT5G22650 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7536274-7541273 Arabidopsis thaliana
AT5G22650 10.0kb upstream 10.0kb upstream 12257 true Chr5: 7524017-7536273 Arabidopsis thaliana
AT5G22650 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7524017-7534016 Arabidopsis thaliana
AT5G22650 10.0kb downstream 10.0kb downstream 12257 true Chr5: 7534017-7546273 Arabidopsis thaliana
AT5G22650 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7536274-7546273 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373993 5261 Brassicaceae View MSA
123839233 5264 Brassicales-Malvales View MSA
124343902 5266 SBM View MSA
124252646 5268 Malvidae View MSA
124068201 5270 Rosid View MSA
123749750 5271 Pentapetalae View MSA
122797243 5272 Eudicot View MSA
122051478 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121349885 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.634     High  
cufflinks 46.054     High  
cufflinks 25.56        
cufflinks 50.362     High  
cufflinks 22.085       Low
cufflinks 58.429     High High

0 Strain