Gene : AT5G22560 A. thaliana TAIR10
Defline:  (1 of 8) PTHR31549//PTHR31549:SF3 - FAMILY NOT NAMED // EMB|CAB72473.1 Genomic Order:  2126
Name:  ? AT5G22560 Secondary Identifier:  ? PAC:19672281
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G22560 0.5kb upstream 0.5kb upstream 2321 true Chr5: 7491356-7493676 Arabidopsis thaliana
AT5G22560 0.5kb upstream 0.5kb upstream 500 false Chr5: 7493177-7493676 Arabidopsis thaliana
AT5G22560 0.5kb downstream 0.5kb downstream 2321 true Chr5: 7490856-7493176 Arabidopsis thaliana
AT5G22560 0.5kb downstream 0.5kb downstream 500 false Chr5: 7490856-7491355 Arabidopsis thaliana
AT5G22560 1.0kb upstream 1.0kb upstream 2821 true Chr5: 7491356-7494176 Arabidopsis thaliana
AT5G22560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7493177-7494176 Arabidopsis thaliana
AT5G22560 1.0kb downstream 1.0kb downstream 2821 true Chr5: 7490356-7493176 Arabidopsis thaliana
AT5G22560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7490356-7491355 Arabidopsis thaliana
AT5G22560 2.0kb upstream 2.0kb upstream 3821 true Chr5: 7491356-7495176 Arabidopsis thaliana
AT5G22560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7493177-7495176 Arabidopsis thaliana
AT5G22560 2.0kb downstream 2.0kb downstream 3821 true Chr5: 7489356-7493176 Arabidopsis thaliana
AT5G22560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7489356-7491355 Arabidopsis thaliana
AT5G22560 5.0kb upstream 5.0kb upstream 6821 true Chr5: 7491356-7498176 Arabidopsis thaliana
AT5G22560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7493177-7498176 Arabidopsis thaliana
AT5G22560 5.0kb downstream 5.0kb downstream 6821 true Chr5: 7486356-7493176 Arabidopsis thaliana
AT5G22560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7486356-7491355 Arabidopsis thaliana
AT5G22560 10.0kb upstream 10.0kb upstream 11821 true Chr5: 7491356-7503176 Arabidopsis thaliana
AT5G22560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7493177-7503176 Arabidopsis thaliana
AT5G22560 10.0kb downstream 10.0kb downstream 11821 true Chr5: 7481356-7493176 Arabidopsis thaliana
AT5G22560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7481356-7491355 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380431 5261 Brassicaceae View MSA
123830448 5264 Brassicales-Malvales View MSA
124351370 5266 SBM View MSA
124254082 5268 Malvidae View MSA
124074599 5270 Rosid View MSA
123753721 5271 Pentapetalae View MSA
122797892 5272 Eudicot View MSA
122051031 5273 Angiosperm View MSA
121351531 5274 Embryophyte View MSA
123382209 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.229     Low  
cufflinks 0.148     Low  
cufflinks 0.012     Low Low
cufflinks 0.355     Low  
cufflinks 0.039     Low  
cufflinks 0.208     Low  

0 Strain