Gene : AT5G22540 A. thaliana TAIR10
Defline:  (1 of 8) PTHR31549//PTHR31549:SF3 - FAMILY NOT NAMED // EMB|CAB72473.1 Genomic Order:  2122
Name:  ? AT5G22540 Secondary Identifier:  ? PAC:19670607
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G22540 0.5kb upstream 0.5kb upstream 1976 true Chr5: 7481478-7483453 Arabidopsis thaliana
AT5G22540 0.5kb upstream 0.5kb upstream 500 false Chr5: 7482954-7483453 Arabidopsis thaliana
AT5G22540 0.5kb downstream 0.5kb downstream 1976 true Chr5: 7480978-7482953 Arabidopsis thaliana
AT5G22540 0.5kb downstream 0.5kb downstream 500 false Chr5: 7480978-7481477 Arabidopsis thaliana
AT5G22540 1.0kb upstream 1.0kb upstream 2476 true Chr5: 7481478-7483953 Arabidopsis thaliana
AT5G22540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7482954-7483953 Arabidopsis thaliana
AT5G22540 1.0kb downstream 1.0kb downstream 2476 true Chr5: 7480478-7482953 Arabidopsis thaliana
AT5G22540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7480478-7481477 Arabidopsis thaliana
AT5G22540 2.0kb upstream 2.0kb upstream 3476 true Chr5: 7481478-7484953 Arabidopsis thaliana
AT5G22540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7482954-7484953 Arabidopsis thaliana
AT5G22540 2.0kb downstream 2.0kb downstream 3476 true Chr5: 7479478-7482953 Arabidopsis thaliana
AT5G22540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7479478-7481477 Arabidopsis thaliana
AT5G22540 5.0kb upstream 5.0kb upstream 6476 true Chr5: 7481478-7487953 Arabidopsis thaliana
AT5G22540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7482954-7487953 Arabidopsis thaliana
AT5G22540 5.0kb downstream 5.0kb downstream 6476 true Chr5: 7476478-7482953 Arabidopsis thaliana
AT5G22540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7476478-7481477 Arabidopsis thaliana
AT5G22540 10.0kb upstream 10.0kb upstream 11476 true Chr5: 7481478-7492953 Arabidopsis thaliana
AT5G22540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7482954-7492953 Arabidopsis thaliana
AT5G22540 10.0kb downstream 10.0kb downstream 11476 true Chr5: 7471478-7482953 Arabidopsis thaliana
AT5G22540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7471478-7481477 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380431 5261 Brassicaceae View MSA
123830448 5264 Brassicales-Malvales View MSA
124351370 5266 SBM View MSA
124254082 5268 Malvidae View MSA
124074599 5270 Rosid View MSA
123753721 5271 Pentapetalae View MSA
122797892 5272 Eudicot View MSA
122051031 5273 Angiosperm View MSA
121351531 5274 Embryophyte View MSA
123382209 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.706        
cufflinks 8.065        
cufflinks 1.941       Low
cufflinks 7.326        
cufflinks 3.045        
cufflinks 4.255        

0 Strain