Gene : AT5G21940 A. thaliana TAIR10
Genomic Order:  2062 Name:  ? AT5G21940
Secondary Identifier:  ? PAC:19668641
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G21940 0.5kb upstream 0.5kb upstream 1772 true Chr5: 7249268-7251039 Arabidopsis thaliana
AT5G21940 0.5kb upstream 0.5kb upstream 500 false Chr5: 7250540-7251039 Arabidopsis thaliana
AT5G21940 0.5kb downstream 0.5kb downstream 1772 true Chr5: 7248768-7250539 Arabidopsis thaliana
AT5G21940 0.5kb downstream 0.5kb downstream 500 false Chr5: 7248768-7249267 Arabidopsis thaliana
AT5G21940 1.0kb upstream 1.0kb upstream 2272 true Chr5: 7249268-7251539 Arabidopsis thaliana
AT5G21940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7250540-7251539 Arabidopsis thaliana
AT5G21940 1.0kb downstream 1.0kb downstream 2272 true Chr5: 7248268-7250539 Arabidopsis thaliana
AT5G21940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7248268-7249267 Arabidopsis thaliana
AT5G21940 2.0kb upstream 2.0kb upstream 3272 true Chr5: 7249268-7252539 Arabidopsis thaliana
AT5G21940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7250540-7252539 Arabidopsis thaliana
AT5G21940 2.0kb downstream 2.0kb downstream 3272 true Chr5: 7247268-7250539 Arabidopsis thaliana
AT5G21940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7247268-7249267 Arabidopsis thaliana
AT5G21940 5.0kb upstream 5.0kb upstream 6272 true Chr5: 7249268-7255539 Arabidopsis thaliana
AT5G21940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7250540-7255539 Arabidopsis thaliana
AT5G21940 5.0kb downstream 5.0kb downstream 6272 true Chr5: 7244268-7250539 Arabidopsis thaliana
AT5G21940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7244268-7249267 Arabidopsis thaliana
AT5G21940 10.0kb upstream 10.0kb upstream 11272 true Chr5: 7249268-7260539 Arabidopsis thaliana
AT5G21940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7250540-7260539 Arabidopsis thaliana
AT5G21940 10.0kb downstream 10.0kb downstream 11272 true Chr5: 7239268-7250539 Arabidopsis thaliana
AT5G21940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7239268-7249267 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373227 5261 Brassicaceae View MSA
123839419 5264 Brassicales-Malvales View MSA
124349249 5266 SBM View MSA
124250850 5268 Malvidae View MSA
124073075 5270 Rosid View MSA
123744259 5271 Pentapetalae View MSA
122795127 5272 Eudicot View MSA
122049442 5273 Angiosperm View MSA
121350445 5274 Embryophyte View MSA
123381735 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 94.71     High  
cufflinks 61.142     High  
cufflinks 148.558     High High
cufflinks 66.565     High  
cufflinks 128.56     High  
cufflinks 62.037     High  

0 Strain