Gene : CKX7 A. thaliana TAIR10
Primary Identifier:  ? AT5G21482 Defline:  (1 of 1) PTHR11748//PTHR11748:SF17 - D-LACTATE DEHYDROGENASE // CYTOKININ DEHYDROGENASE 2-RELATED
Genomic Order:  2057 Name:  ? AT5G21482
Secondary Identifier:  ? PAC:19670108
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G21482 0.5kb upstream 0.5kb upstream 3984 true Chr5: 7226227-7230210 Arabidopsis thaliana
AT5G21482 0.5kb upstream 0.5kb upstream 500 false Chr5: 7226227-7226726 Arabidopsis thaliana
AT5G21482 0.5kb downstream 0.5kb downstream 3984 true Chr5: 7226727-7230710 Arabidopsis thaliana
AT5G21482 0.5kb downstream 0.5kb downstream 500 false Chr5: 7230211-7230710 Arabidopsis thaliana
AT5G21482 1.0kb upstream 1.0kb upstream 4484 true Chr5: 7225727-7230210 Arabidopsis thaliana
AT5G21482 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7225727-7226726 Arabidopsis thaliana
AT5G21482 1.0kb downstream 1.0kb downstream 4484 true Chr5: 7226727-7231210 Arabidopsis thaliana
AT5G21482 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7230211-7231210 Arabidopsis thaliana
AT5G21482 2.0kb upstream 2.0kb upstream 5484 true Chr5: 7224727-7230210 Arabidopsis thaliana
AT5G21482 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7224727-7226726 Arabidopsis thaliana
AT5G21482 2.0kb downstream 2.0kb downstream 5484 true Chr5: 7226727-7232210 Arabidopsis thaliana
AT5G21482 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7230211-7232210 Arabidopsis thaliana
AT5G21482 5.0kb upstream 5.0kb upstream 8484 true Chr5: 7221727-7230210 Arabidopsis thaliana
AT5G21482 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7221727-7226726 Arabidopsis thaliana
AT5G21482 5.0kb downstream 5.0kb downstream 8484 true Chr5: 7226727-7235210 Arabidopsis thaliana
AT5G21482 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7230211-7235210 Arabidopsis thaliana
AT5G21482 10.0kb upstream 10.0kb upstream 13484 true Chr5: 7216727-7230210 Arabidopsis thaliana
AT5G21482 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7216727-7226726 Arabidopsis thaliana
AT5G21482 10.0kb downstream 10.0kb downstream 13484 true Chr5: 7226727-7240210 Arabidopsis thaliana
AT5G21482 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7230211-7240210 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379711 5261 Brassicaceae View MSA
123837511 5264 Brassicales-Malvales View MSA
124340981 5266 SBM View MSA
124236908 5268 Malvidae View MSA
124065015 5270 Rosid View MSA
123739004 5271 Pentapetalae View MSA
122769941 5272 Eudicot View MSA
122041692 5273 Angiosperm View MSA
121309881 5274 Embryophyte View MSA
123347519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.313        
cufflinks 10.683       High
cufflinks 5.061        
cufflinks 7.784        
cufflinks 4.446       Low
cufflinks 9.998        

0 Strain