Gene : AT5G21130 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31852:SF0 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  2048
Name:  ? AT5G21130 Secondary Identifier:  ? PAC:19668983
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G21130 0.5kb upstream 0.5kb upstream 1505 true Chr5: 7185415-7186919 Arabidopsis thaliana
AT5G21130 0.5kb upstream 0.5kb upstream 500 false Chr5: 7185415-7185914 Arabidopsis thaliana
AT5G21130 0.5kb downstream 0.5kb downstream 1505 true Chr5: 7185915-7187419 Arabidopsis thaliana
AT5G21130 0.5kb downstream 0.5kb downstream 500 false Chr5: 7186920-7187419 Arabidopsis thaliana
AT5G21130 1.0kb upstream 1.0kb upstream 2005 true Chr5: 7184915-7186919 Arabidopsis thaliana
AT5G21130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7184915-7185914 Arabidopsis thaliana
AT5G21130 1.0kb downstream 1.0kb downstream 2005 true Chr5: 7185915-7187919 Arabidopsis thaliana
AT5G21130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7186920-7187919 Arabidopsis thaliana
AT5G21130 2.0kb upstream 2.0kb upstream 3005 true Chr5: 7183915-7186919 Arabidopsis thaliana
AT5G21130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7183915-7185914 Arabidopsis thaliana
AT5G21130 2.0kb downstream 2.0kb downstream 3005 true Chr5: 7185915-7188919 Arabidopsis thaliana
AT5G21130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7186920-7188919 Arabidopsis thaliana
AT5G21130 5.0kb upstream 5.0kb upstream 6005 true Chr5: 7180915-7186919 Arabidopsis thaliana
AT5G21130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7180915-7185914 Arabidopsis thaliana
AT5G21130 5.0kb downstream 5.0kb downstream 6005 true Chr5: 7185915-7191919 Arabidopsis thaliana
AT5G21130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7186920-7191919 Arabidopsis thaliana
AT5G21130 10.0kb upstream 10.0kb upstream 11005 true Chr5: 7175915-7186919 Arabidopsis thaliana
AT5G21130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7175915-7185914 Arabidopsis thaliana
AT5G21130 10.0kb downstream 10.0kb downstream 11005 true Chr5: 7185915-7196919 Arabidopsis thaliana
AT5G21130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7186920-7196919 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370124 5261 Brassicaceae View MSA
123799904 5264 Brassicales-Malvales View MSA
124297376 5266 SBM View MSA
124149285 5268 Malvidae View MSA
123875122 5270 Rosid View MSA
123742078 5271 Pentapetalae View MSA
122788444 5272 Eudicot View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.122     Low High

0 Strain