Gene : AO1 A. thaliana TAIR10
Primary Identifier:  ? AT5G20960 Defline:  (1 of 2) K11817 - indole-3-acetaldehyde oxidase (AAO1_2)
Genomic Order:  2029 Name:  ? AT5G20960
Secondary Identifier:  ? PAC:19672074
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0 Pathways

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20960 0.5kb upstream 0.5kb upstream 6537 true Chr5: 7116238-7122774 Arabidopsis thaliana
AT5G20960 0.5kb upstream 0.5kb upstream 500 false Chr5: 7116238-7116737 Arabidopsis thaliana
AT5G20960 0.5kb downstream 0.5kb downstream 6537 true Chr5: 7116738-7123274 Arabidopsis thaliana
AT5G20960 0.5kb downstream 0.5kb downstream 500 false Chr5: 7122775-7123274 Arabidopsis thaliana
AT5G20960 1.0kb upstream 1.0kb upstream 7037 true Chr5: 7115738-7122774 Arabidopsis thaliana
AT5G20960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7115738-7116737 Arabidopsis thaliana
AT5G20960 1.0kb downstream 1.0kb downstream 7037 true Chr5: 7116738-7123774 Arabidopsis thaliana
AT5G20960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7122775-7123774 Arabidopsis thaliana
AT5G20960 2.0kb upstream 2.0kb upstream 8037 true Chr5: 7114738-7122774 Arabidopsis thaliana
AT5G20960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7114738-7116737 Arabidopsis thaliana
AT5G20960 2.0kb downstream 2.0kb downstream 8037 true Chr5: 7116738-7124774 Arabidopsis thaliana
AT5G20960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7122775-7124774 Arabidopsis thaliana
AT5G20960 5.0kb upstream 5.0kb upstream 11037 true Chr5: 7111738-7122774 Arabidopsis thaliana
AT5G20960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7111738-7116737 Arabidopsis thaliana
AT5G20960 5.0kb downstream 5.0kb downstream 11037 true Chr5: 7116738-7127774 Arabidopsis thaliana
AT5G20960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7122775-7127774 Arabidopsis thaliana
AT5G20960 10.0kb upstream 10.0kb upstream 16037 true Chr5: 7106738-7122774 Arabidopsis thaliana
AT5G20960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7106738-7116737 Arabidopsis thaliana
AT5G20960 10.0kb downstream 10.0kb downstream 16037 true Chr5: 7116738-7132774 Arabidopsis thaliana
AT5G20960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7122775-7132774 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375155 5261 Brassicaceae View MSA
123839082 5264 Brassicales-Malvales View MSA
124342435 5266 SBM View MSA
124239057 5268 Malvidae View MSA
124064752 5270 Rosid View MSA
123746349 5271 Pentapetalae View MSA
122793870 5272 Eudicot View MSA
122051504 5273 Angiosperm View MSA
121345384 5274 Embryophyte View MSA
123426829 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.985        
cufflinks 11.712        
cufflinks 1.834       Low
cufflinks 18.408       High
cufflinks 3.993        
cufflinks 12.494        

0 Strain