Gene : AT5G20885 A. thaliana TAIR10
Defline:  (1 of 1) PTHR14155//PTHR14155:SF147 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Genomic Order:  2020
Name:  ? AT5G20885 Secondary Identifier:  ? PAC:19667775
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20885 0.5kb upstream 0.5kb upstream 1270 true Chr5: 7083965-7085234 Arabidopsis thaliana
AT5G20885 0.5kb upstream 0.5kb upstream 500 false Chr5: 7084735-7085234 Arabidopsis thaliana
AT5G20885 0.5kb downstream 0.5kb downstream 1270 true Chr5: 7083465-7084734 Arabidopsis thaliana
AT5G20885 0.5kb downstream 0.5kb downstream 500 false Chr5: 7083465-7083964 Arabidopsis thaliana
AT5G20885 1.0kb upstream 1.0kb upstream 1770 true Chr5: 7083965-7085734 Arabidopsis thaliana
AT5G20885 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7084735-7085734 Arabidopsis thaliana
AT5G20885 1.0kb downstream 1.0kb downstream 1770 true Chr5: 7082965-7084734 Arabidopsis thaliana
AT5G20885 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7082965-7083964 Arabidopsis thaliana
AT5G20885 2.0kb upstream 2.0kb upstream 2770 true Chr5: 7083965-7086734 Arabidopsis thaliana
AT5G20885 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7084735-7086734 Arabidopsis thaliana
AT5G20885 2.0kb downstream 2.0kb downstream 2770 true Chr5: 7081965-7084734 Arabidopsis thaliana
AT5G20885 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7081965-7083964 Arabidopsis thaliana
AT5G20885 5.0kb upstream 5.0kb upstream 5770 true Chr5: 7083965-7089734 Arabidopsis thaliana
AT5G20885 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7084735-7089734 Arabidopsis thaliana
AT5G20885 5.0kb downstream 5.0kb downstream 5770 true Chr5: 7078965-7084734 Arabidopsis thaliana
AT5G20885 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7078965-7083964 Arabidopsis thaliana
AT5G20885 10.0kb upstream 10.0kb upstream 10770 true Chr5: 7083965-7094734 Arabidopsis thaliana
AT5G20885 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7084735-7094734 Arabidopsis thaliana
AT5G20885 10.0kb downstream 10.0kb downstream 10770 true Chr5: 7073965-7084734 Arabidopsis thaliana
AT5G20885 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7073965-7083964 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369458 5261 Brassicaceae View MSA
123834569 5264 Brassicales-Malvales View MSA
124344842 5266 SBM View MSA
124254679 5268 Malvidae View MSA
124074887 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.523        
cufflinks 67.969     High  
cufflinks 12.198        
cufflinks 68.017     High  
cufflinks 10.57       Low
cufflinks 75.137     High  

0 Strain