Gene : AT5G20890 A. thaliana TAIR10
Defline:  (1 of 1) K09494 - T-complex protein 1 subunit beta (CCT2) Genomic Order:  2021
Name:  ? AT5G20890 Secondary Identifier:  ? PAC:19672522
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20890 0.5kb upstream 0.5kb upstream 3929 true Chr5: 7086653-7090581 Arabidopsis thaliana
AT5G20890 0.5kb upstream 0.5kb upstream 500 false Chr5: 7090082-7090581 Arabidopsis thaliana
AT5G20890 0.5kb downstream 0.5kb downstream 3929 true Chr5: 7086153-7090081 Arabidopsis thaliana
AT5G20890 0.5kb downstream 0.5kb downstream 500 false Chr5: 7086153-7086652 Arabidopsis thaliana
AT5G20890 1.0kb upstream 1.0kb upstream 4429 true Chr5: 7086653-7091081 Arabidopsis thaliana
AT5G20890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7090082-7091081 Arabidopsis thaliana
AT5G20890 1.0kb downstream 1.0kb downstream 4429 true Chr5: 7085653-7090081 Arabidopsis thaliana
AT5G20890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7085653-7086652 Arabidopsis thaliana
AT5G20890 2.0kb upstream 2.0kb upstream 5429 true Chr5: 7086653-7092081 Arabidopsis thaliana
AT5G20890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7090082-7092081 Arabidopsis thaliana
AT5G20890 2.0kb downstream 2.0kb downstream 5429 true Chr5: 7084653-7090081 Arabidopsis thaliana
AT5G20890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7084653-7086652 Arabidopsis thaliana
AT5G20890 5.0kb upstream 5.0kb upstream 8429 true Chr5: 7086653-7095081 Arabidopsis thaliana
AT5G20890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7090082-7095081 Arabidopsis thaliana
AT5G20890 5.0kb downstream 5.0kb downstream 8429 true Chr5: 7081653-7090081 Arabidopsis thaliana
AT5G20890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7081653-7086652 Arabidopsis thaliana
AT5G20890 10.0kb upstream 10.0kb upstream 13429 true Chr5: 7086653-7100081 Arabidopsis thaliana
AT5G20890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7090082-7100081 Arabidopsis thaliana
AT5G20890 10.0kb downstream 10.0kb downstream 13429 true Chr5: 7076653-7090081 Arabidopsis thaliana
AT5G20890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7076653-7086652 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378458 5261 Brassicaceae View MSA
123830233 5264 Brassicales-Malvales View MSA
124338301 5266 SBM View MSA
124240665 5268 Malvidae View MSA
124064073 5270 Rosid View MSA
123747286 5271 Pentapetalae View MSA
122790745 5272 Eudicot View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.24     High  
cufflinks 72.207     High  
cufflinks 40.286     High  
cufflinks 76.239     High  
cufflinks 35.734     High Low
cufflinks 85.725     High High

0 Strain