Gene : AT5G20860 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31707:SF19 - PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED Genomic Order:  2018
Name:  ? AT5G20860 Secondary Identifier:  ? PAC:19668569
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G20860 0.5kb upstream 0.5kb upstream 2688 true Chr5: 7076890-7079577 Arabidopsis thaliana
AT5G20860 0.5kb upstream 0.5kb upstream 500 false Chr5: 7079078-7079577 Arabidopsis thaliana
AT5G20860 0.5kb downstream 0.5kb downstream 2688 true Chr5: 7076390-7079077 Arabidopsis thaliana
AT5G20860 0.5kb downstream 0.5kb downstream 500 false Chr5: 7076390-7076889 Arabidopsis thaliana
AT5G20860 1.0kb upstream 1.0kb upstream 3188 true Chr5: 7076890-7080077 Arabidopsis thaliana
AT5G20860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7079078-7080077 Arabidopsis thaliana
AT5G20860 1.0kb downstream 1.0kb downstream 3188 true Chr5: 7075890-7079077 Arabidopsis thaliana
AT5G20860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7075890-7076889 Arabidopsis thaliana
AT5G20860 2.0kb upstream 2.0kb upstream 4188 true Chr5: 7076890-7081077 Arabidopsis thaliana
AT5G20860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7079078-7081077 Arabidopsis thaliana
AT5G20860 2.0kb downstream 2.0kb downstream 4188 true Chr5: 7074890-7079077 Arabidopsis thaliana
AT5G20860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7074890-7076889 Arabidopsis thaliana
AT5G20860 5.0kb upstream 5.0kb upstream 7188 true Chr5: 7076890-7084077 Arabidopsis thaliana
AT5G20860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7079078-7084077 Arabidopsis thaliana
AT5G20860 5.0kb downstream 5.0kb downstream 7188 true Chr5: 7071890-7079077 Arabidopsis thaliana
AT5G20860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7071890-7076889 Arabidopsis thaliana
AT5G20860 10.0kb upstream 10.0kb upstream 12188 true Chr5: 7076890-7089077 Arabidopsis thaliana
AT5G20860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7079078-7089077 Arabidopsis thaliana
AT5G20860 10.0kb downstream 10.0kb downstream 12188 true Chr5: 7066890-7079077 Arabidopsis thaliana
AT5G20860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7066890-7076889 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041117 5273 Angiosperm View MSA
122378785 5261 Brassicaceae View MSA
123828597 5264 Brassicales-Malvales View MSA
124343715 5266 SBM View MSA
124243570 5268 Malvidae View MSA
124066033 5270 Rosid View MSA
123738499 5271 Pentapetalae View MSA
122787006 5272 Eudicot View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.032     Low  
cufflinks 2.999        
cufflinks 0.007     Low Low
cufflinks 3.01        
cufflinks 0.094     Low  
cufflinks 4.792        

0 Strain