Gene : AT5G24580 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22814//PTHR22814:SF51 - COPPER TRANSPORT PROTEIN ATOX1-RELATED // HEAVY METAL TRANSPORT/DETOXIFICATION DOMAIN-CONTAINING PROTEIN Genomic Order:  2347
Name:  ? AT5G24580 Secondary Identifier:  ? PAC:19668509
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24580 0.5kb upstream 0.5kb upstream 2508 true Chr5: 8410258-8412765 Arabidopsis thaliana
AT5G24580 0.5kb upstream 0.5kb upstream 500 false Chr5: 8412266-8412765 Arabidopsis thaliana
AT5G24580 0.5kb downstream 0.5kb downstream 2508 true Chr5: 8409758-8412265 Arabidopsis thaliana
AT5G24580 0.5kb downstream 0.5kb downstream 500 false Chr5: 8409758-8410257 Arabidopsis thaliana
AT5G24580 1.0kb upstream 1.0kb upstream 3008 true Chr5: 8410258-8413265 Arabidopsis thaliana
AT5G24580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8412266-8413265 Arabidopsis thaliana
AT5G24580 1.0kb downstream 1.0kb downstream 3008 true Chr5: 8409258-8412265 Arabidopsis thaliana
AT5G24580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8409258-8410257 Arabidopsis thaliana
AT5G24580 2.0kb upstream 2.0kb upstream 4008 true Chr5: 8410258-8414265 Arabidopsis thaliana
AT5G24580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8412266-8414265 Arabidopsis thaliana
AT5G24580 2.0kb downstream 2.0kb downstream 4008 true Chr5: 8408258-8412265 Arabidopsis thaliana
AT5G24580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8408258-8410257 Arabidopsis thaliana
AT5G24580 5.0kb upstream 5.0kb upstream 7008 true Chr5: 8410258-8417265 Arabidopsis thaliana
AT5G24580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8412266-8417265 Arabidopsis thaliana
AT5G24580 5.0kb downstream 5.0kb downstream 7008 true Chr5: 8405258-8412265 Arabidopsis thaliana
AT5G24580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8405258-8410257 Arabidopsis thaliana
AT5G24580 10.0kb upstream 10.0kb upstream 12008 true Chr5: 8410258-8422265 Arabidopsis thaliana
AT5G24580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8412266-8422265 Arabidopsis thaliana
AT5G24580 10.0kb downstream 10.0kb downstream 12008 true Chr5: 8400258-8412265 Arabidopsis thaliana
AT5G24580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8400258-8410257 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365147 5261 Brassicaceae View MSA
123838969 5264 Brassicales-Malvales View MSA
124322529 5266 SBM View MSA
124249747 5268 Malvidae View MSA
124070367 5270 Rosid View MSA
123750804 5271 Pentapetalae View MSA
122795172 5272 Eudicot View MSA
122041833 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.709        
cufflinks 0.492       Low
cufflinks 1.433       High
cufflinks 0.574        
cufflinks 0.807        
cufflinks 0.955        

0 Strain