Gene : IRE1-1 A. thaliana TAIR10
Primary Identifier:  ? AT5G24360 Defline:  (1 of 2) PTHR13954:SF13 - SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B
Genomic Order:  2325 Name:  ? AT5G24360
Secondary Identifier:  ? PAC:19669405
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24360 0.5kb upstream 0.5kb upstream 4042 true Chr5: 8315940-8319981 Arabidopsis thaliana
AT5G24360 0.5kb upstream 0.5kb upstream 500 false Chr5: 8315940-8316439 Arabidopsis thaliana
AT5G24360 0.5kb downstream 0.5kb downstream 4042 true Chr5: 8316440-8320481 Arabidopsis thaliana
AT5G24360 0.5kb downstream 0.5kb downstream 500 false Chr5: 8319982-8320481 Arabidopsis thaliana
AT5G24360 1.0kb upstream 1.0kb upstream 4542 true Chr5: 8315440-8319981 Arabidopsis thaliana
AT5G24360 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8315440-8316439 Arabidopsis thaliana
AT5G24360 1.0kb downstream 1.0kb downstream 4542 true Chr5: 8316440-8320981 Arabidopsis thaliana
AT5G24360 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8319982-8320981 Arabidopsis thaliana
AT5G24360 2.0kb upstream 2.0kb upstream 5542 true Chr5: 8314440-8319981 Arabidopsis thaliana
AT5G24360 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8314440-8316439 Arabidopsis thaliana
AT5G24360 2.0kb downstream 2.0kb downstream 5542 true Chr5: 8316440-8321981 Arabidopsis thaliana
AT5G24360 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8319982-8321981 Arabidopsis thaliana
AT5G24360 5.0kb upstream 5.0kb upstream 8542 true Chr5: 8311440-8319981 Arabidopsis thaliana
AT5G24360 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8311440-8316439 Arabidopsis thaliana
AT5G24360 5.0kb downstream 5.0kb downstream 8542 true Chr5: 8316440-8324981 Arabidopsis thaliana
AT5G24360 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8319982-8324981 Arabidopsis thaliana
AT5G24360 10.0kb upstream 10.0kb upstream 13542 true Chr5: 8306440-8319981 Arabidopsis thaliana
AT5G24360 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8306440-8316439 Arabidopsis thaliana
AT5G24360 10.0kb downstream 10.0kb downstream 13542 true Chr5: 8316440-8329981 Arabidopsis thaliana
AT5G24360 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8319982-8329981 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372802 5261 Brassicaceae View MSA
123827975 5264 Brassicales-Malvales View MSA
124345434 5266 SBM View MSA
124250283 5268 Malvidae View MSA
124069221 5270 Rosid View MSA
123736649 5271 Pentapetalae View MSA
122796979 5272 Eudicot View MSA
122047028 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121347978 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.196        
cufflinks 3.934        
cufflinks 2.597       Low
cufflinks 4.345       High
cufflinks 2.719       Low
cufflinks 4.076        

0 Strain