Gene : AT5G24060 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13343:SF13 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  2286
Name:  ? AT5G24060 Secondary Identifier:  ? PAC:19667373
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24060 0.5kb upstream 0.5kb upstream 3823 true Chr5: 8129979-8133801 Arabidopsis thaliana
AT5G24060 0.5kb upstream 0.5kb upstream 500 false Chr5: 8133302-8133801 Arabidopsis thaliana
AT5G24060 0.5kb downstream 0.5kb downstream 3823 true Chr5: 8129479-8133301 Arabidopsis thaliana
AT5G24060 0.5kb downstream 0.5kb downstream 500 false Chr5: 8129479-8129978 Arabidopsis thaliana
AT5G24060 1.0kb upstream 1.0kb upstream 4323 true Chr5: 8129979-8134301 Arabidopsis thaliana
AT5G24060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8133302-8134301 Arabidopsis thaliana
AT5G24060 1.0kb downstream 1.0kb downstream 4323 true Chr5: 8128979-8133301 Arabidopsis thaliana
AT5G24060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8128979-8129978 Arabidopsis thaliana
AT5G24060 2.0kb upstream 2.0kb upstream 5323 true Chr5: 8129979-8135301 Arabidopsis thaliana
AT5G24060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8133302-8135301 Arabidopsis thaliana
AT5G24060 2.0kb downstream 2.0kb downstream 5323 true Chr5: 8127979-8133301 Arabidopsis thaliana
AT5G24060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8127979-8129978 Arabidopsis thaliana
AT5G24060 5.0kb upstream 5.0kb upstream 8323 true Chr5: 8129979-8138301 Arabidopsis thaliana
AT5G24060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8133302-8138301 Arabidopsis thaliana
AT5G24060 5.0kb downstream 5.0kb downstream 8323 true Chr5: 8124979-8133301 Arabidopsis thaliana
AT5G24060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8124979-8129978 Arabidopsis thaliana
AT5G24060 10.0kb upstream 10.0kb upstream 13323 true Chr5: 8129979-8143301 Arabidopsis thaliana
AT5G24060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8133302-8143301 Arabidopsis thaliana
AT5G24060 10.0kb downstream 10.0kb downstream 13323 true Chr5: 8119979-8133301 Arabidopsis thaliana
AT5G24060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8119979-8129978 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363810 5261 Brassicaceae View MSA
123836782 5264 Brassicales-Malvales View MSA
124341056 5266 SBM View MSA
124252927 5268 Malvidae View MSA
124066138 5270 Rosid View MSA
123741710 5271 Pentapetalae View MSA
122789997 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.497       High
cufflinks 3.467        
cufflinks 10.03        
cufflinks 3.276        
cufflinks 8.232        
cufflinks 2.673       Low

0 Strain