Gene : AT5G23900 A. thaliana TAIR10
Defline:  (1 of 3) K02873 - large subunit ribosomal protein L13e (RP-L13e, RPL13) Genomic Order:  2267
Name:  ? AT5G23900 Secondary Identifier:  ? PAC:19668301
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23900 0.5kb upstream 0.5kb upstream 2039 true Chr5: 8063985-8066023 Arabidopsis thaliana
AT5G23900 0.5kb upstream 0.5kb upstream 500 false Chr5: 8065524-8066023 Arabidopsis thaliana
AT5G23900 0.5kb downstream 0.5kb downstream 2039 true Chr5: 8063485-8065523 Arabidopsis thaliana
AT5G23900 0.5kb downstream 0.5kb downstream 500 false Chr5: 8063485-8063984 Arabidopsis thaliana
AT5G23900 1.0kb upstream 1.0kb upstream 2539 true Chr5: 8063985-8066523 Arabidopsis thaliana
AT5G23900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8065524-8066523 Arabidopsis thaliana
AT5G23900 1.0kb downstream 1.0kb downstream 2539 true Chr5: 8062985-8065523 Arabidopsis thaliana
AT5G23900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8062985-8063984 Arabidopsis thaliana
AT5G23900 2.0kb upstream 2.0kb upstream 3539 true Chr5: 8063985-8067523 Arabidopsis thaliana
AT5G23900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8065524-8067523 Arabidopsis thaliana
AT5G23900 2.0kb downstream 2.0kb downstream 3539 true Chr5: 8061985-8065523 Arabidopsis thaliana
AT5G23900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8061985-8063984 Arabidopsis thaliana
AT5G23900 5.0kb upstream 5.0kb upstream 6539 true Chr5: 8063985-8070523 Arabidopsis thaliana
AT5G23900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8065524-8070523 Arabidopsis thaliana
AT5G23900 5.0kb downstream 5.0kb downstream 6539 true Chr5: 8058985-8065523 Arabidopsis thaliana
AT5G23900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8058985-8063984 Arabidopsis thaliana
AT5G23900 10.0kb upstream 10.0kb upstream 11539 true Chr5: 8063985-8075523 Arabidopsis thaliana
AT5G23900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8065524-8075523 Arabidopsis thaliana
AT5G23900 10.0kb downstream 10.0kb downstream 11539 true Chr5: 8053985-8065523 Arabidopsis thaliana
AT5G23900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8053985-8063984 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377707 5261 Brassicaceae View MSA
123801610 5264 Brassicales-Malvales View MSA
124348596 5266 SBM View MSA
124242702 5268 Malvidae View MSA
124069609 5270 Rosid View MSA
123744377 5271 Pentapetalae View MSA
122791356 5272 Eudicot View MSA
122049765 5273 Angiosperm View MSA
121344371 5274 Embryophyte View MSA
123426358 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.815     High  
cufflinks 95.614     High  
cufflinks 62.493     High  
cufflinks 99.458     High  
cufflinks 48.384     High Low
cufflinks 103.855     High High

0 Strain