Gene : DUF9 A. thaliana TAIR10
Primary Identifier:  ? AT5G23780 Defline:  (1 of 7) PTHR31917:SF20 - AGENET DOMAIN-CONTAINING PROTEIN-RELATED
Genomic Order:  2255 Name:  ? AT5G23780
Secondary Identifier:  ? PAC:19668142
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23780 0.5kb upstream 0.5kb upstream 2335 true Chr5: 8017192-8019526 Arabidopsis thaliana
AT5G23780 0.5kb upstream 0.5kb upstream 500 false Chr5: 8019027-8019526 Arabidopsis thaliana
AT5G23780 0.5kb downstream 0.5kb downstream 2335 true Chr5: 8016692-8019026 Arabidopsis thaliana
AT5G23780 0.5kb downstream 0.5kb downstream 500 false Chr5: 8016692-8017191 Arabidopsis thaliana
AT5G23780 1.0kb upstream 1.0kb upstream 2835 true Chr5: 8017192-8020026 Arabidopsis thaliana
AT5G23780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8019027-8020026 Arabidopsis thaliana
AT5G23780 1.0kb downstream 1.0kb downstream 2835 true Chr5: 8016192-8019026 Arabidopsis thaliana
AT5G23780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8016192-8017191 Arabidopsis thaliana
AT5G23780 2.0kb upstream 2.0kb upstream 3835 true Chr5: 8017192-8021026 Arabidopsis thaliana
AT5G23780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8019027-8021026 Arabidopsis thaliana
AT5G23780 2.0kb downstream 2.0kb downstream 3835 true Chr5: 8015192-8019026 Arabidopsis thaliana
AT5G23780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8015192-8017191 Arabidopsis thaliana
AT5G23780 5.0kb upstream 5.0kb upstream 6835 true Chr5: 8017192-8024026 Arabidopsis thaliana
AT5G23780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8019027-8024026 Arabidopsis thaliana
AT5G23780 5.0kb downstream 5.0kb downstream 6835 true Chr5: 8012192-8019026 Arabidopsis thaliana
AT5G23780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8012192-8017191 Arabidopsis thaliana
AT5G23780 10.0kb upstream 10.0kb upstream 11835 true Chr5: 8017192-8029026 Arabidopsis thaliana
AT5G23780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8019027-8029026 Arabidopsis thaliana
AT5G23780 10.0kb downstream 10.0kb downstream 11835 true Chr5: 8007192-8019026 Arabidopsis thaliana
AT5G23780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8007192-8017191 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511914 5273 Angiosperm View MSA
122379475 5261 Brassicaceae View MSA
123802288 5264 Brassicales-Malvales View MSA
124299497 5266 SBM View MSA
124150893 5268 Malvidae View MSA
123876430 5270 Rosid View MSA
123460109 5271 Pentapetalae View MSA
122495488 5272 Eudicot View MSA
120784941 5274 Embryophyte View MSA
122826820 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.334        
cufflinks 1.517        
cufflinks 0.341        
cufflinks 2.028       High
cufflinks 0.217     Low Low
cufflinks 1.25        

0 Strain