Gene : AT5G23680 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10627 - SCP160 Genomic Order:  2245
Name:  ? AT5G23680 Secondary Identifier:  ? PAC:19670964
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23680 0.5kb upstream 0.5kb upstream 1998 true Chr5: 7985354-7987351 Arabidopsis thaliana
AT5G23680 0.5kb upstream 0.5kb upstream 500 false Chr5: 7986852-7987351 Arabidopsis thaliana
AT5G23680 0.5kb downstream 0.5kb downstream 1998 true Chr5: 7984854-7986851 Arabidopsis thaliana
AT5G23680 0.5kb downstream 0.5kb downstream 500 false Chr5: 7984854-7985353 Arabidopsis thaliana
AT5G23680 1.0kb upstream 1.0kb upstream 2498 true Chr5: 7985354-7987851 Arabidopsis thaliana
AT5G23680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7986852-7987851 Arabidopsis thaliana
AT5G23680 1.0kb downstream 1.0kb downstream 2498 true Chr5: 7984354-7986851 Arabidopsis thaliana
AT5G23680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7984354-7985353 Arabidopsis thaliana
AT5G23680 2.0kb upstream 2.0kb upstream 3498 true Chr5: 7985354-7988851 Arabidopsis thaliana
AT5G23680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7986852-7988851 Arabidopsis thaliana
AT5G23680 2.0kb downstream 2.0kb downstream 3498 true Chr5: 7983354-7986851 Arabidopsis thaliana
AT5G23680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7983354-7985353 Arabidopsis thaliana
AT5G23680 5.0kb upstream 5.0kb upstream 6498 true Chr5: 7985354-7991851 Arabidopsis thaliana
AT5G23680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7986852-7991851 Arabidopsis thaliana
AT5G23680 5.0kb downstream 5.0kb downstream 6498 true Chr5: 7980354-7986851 Arabidopsis thaliana
AT5G23680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7980354-7985353 Arabidopsis thaliana
AT5G23680 10.0kb upstream 10.0kb upstream 11498 true Chr5: 7985354-7996851 Arabidopsis thaliana
AT5G23680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7986852-7996851 Arabidopsis thaliana
AT5G23680 10.0kb downstream 10.0kb downstream 11498 true Chr5: 7975354-7986851 Arabidopsis thaliana
AT5G23680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7975354-7985353 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375794 5261 Brassicaceae View MSA
123840750 5264 Brassicales-Malvales View MSA
124338382 5266 SBM View MSA
124238140 5268 Malvidae View MSA
124071735 5270 Rosid View MSA
123744350 5271 Pentapetalae View MSA
122788002 5272 Eudicot View MSA
122041679 5273 Angiosperm View MSA
121347667 5274 Embryophyte View MSA
123380594 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.818       Low
cufflinks 8.791        
cufflinks 6.101        
cufflinks 11.435       High
cufflinks 6.921        
cufflinks 8.479        

0 Strain