Gene : AT5G23520 A. thaliana TAIR10
Defline:  (1 of 2) PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) Genomic Order:  2229
Name:  ? AT5G23520 Secondary Identifier:  ? PAC:19670577
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23520 0.5kb upstream 0.5kb upstream 2943 true Chr5: 7929351-7932293 Arabidopsis thaliana
AT5G23520 0.5kb upstream 0.5kb upstream 500 false Chr5: 7931794-7932293 Arabidopsis thaliana
AT5G23520 0.5kb downstream 0.5kb downstream 2943 true Chr5: 7928851-7931793 Arabidopsis thaliana
AT5G23520 0.5kb downstream 0.5kb downstream 500 false Chr5: 7928851-7929350 Arabidopsis thaliana
AT5G23520 1.0kb upstream 1.0kb upstream 3443 true Chr5: 7929351-7932793 Arabidopsis thaliana
AT5G23520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7931794-7932793 Arabidopsis thaliana
AT5G23520 1.0kb downstream 1.0kb downstream 3443 true Chr5: 7928351-7931793 Arabidopsis thaliana
AT5G23520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7928351-7929350 Arabidopsis thaliana
AT5G23520 2.0kb upstream 2.0kb upstream 4443 true Chr5: 7929351-7933793 Arabidopsis thaliana
AT5G23520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7931794-7933793 Arabidopsis thaliana
AT5G23520 2.0kb downstream 2.0kb downstream 4443 true Chr5: 7927351-7931793 Arabidopsis thaliana
AT5G23520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7927351-7929350 Arabidopsis thaliana
AT5G23520 5.0kb upstream 5.0kb upstream 7443 true Chr5: 7929351-7936793 Arabidopsis thaliana
AT5G23520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7931794-7936793 Arabidopsis thaliana
AT5G23520 5.0kb downstream 5.0kb downstream 7443 true Chr5: 7924351-7931793 Arabidopsis thaliana
AT5G23520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7924351-7929350 Arabidopsis thaliana
AT5G23520 10.0kb upstream 10.0kb upstream 12443 true Chr5: 7929351-7941793 Arabidopsis thaliana
AT5G23520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7931794-7941793 Arabidopsis thaliana
AT5G23520 10.0kb downstream 10.0kb downstream 12443 true Chr5: 7919351-7931793 Arabidopsis thaliana
AT5G23520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7919351-7929350 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026433 5273 Angiosperm View MSA
122362733 5261 Brassicaceae View MSA
123834108 5264 Brassicales-Malvales View MSA
124340985 5266 SBM View MSA
124242304 5268 Malvidae View MSA
124066678 5270 Rosid View MSA
123738985 5271 Pentapetalae View MSA
122791579 5272 Eudicot View MSA
121344234 5274 Embryophyte View MSA
123380011 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.009       High
cufflinks 8.524        
cufflinks 5.844       Low
cufflinks 9.8        
cufflinks 6.247       Low
cufflinks 8.708        

0 Strain