Gene : AT5G23480 A. thaliana TAIR10
Defline:  (1 of 3) PTHR14445:SF39 - SWIB/MDM2, PLUS-3 AND GYF DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  2226
Name:  ? AT5G23480 Secondary Identifier:  ? PAC:19671580
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23480 0.5kb upstream 0.5kb upstream 3465 true Chr5: 7915814-7919278 Arabidopsis thaliana
AT5G23480 0.5kb upstream 0.5kb upstream 500 false Chr5: 7915814-7916313 Arabidopsis thaliana
AT5G23480 0.5kb downstream 0.5kb downstream 3465 true Chr5: 7916314-7919778 Arabidopsis thaliana
AT5G23480 0.5kb downstream 0.5kb downstream 500 false Chr5: 7919279-7919778 Arabidopsis thaliana
AT5G23480 1.0kb upstream 1.0kb upstream 3965 true Chr5: 7915314-7919278 Arabidopsis thaliana
AT5G23480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7915314-7916313 Arabidopsis thaliana
AT5G23480 1.0kb downstream 1.0kb downstream 3965 true Chr5: 7916314-7920278 Arabidopsis thaliana
AT5G23480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7919279-7920278 Arabidopsis thaliana
AT5G23480 2.0kb upstream 2.0kb upstream 4965 true Chr5: 7914314-7919278 Arabidopsis thaliana
AT5G23480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7914314-7916313 Arabidopsis thaliana
AT5G23480 2.0kb downstream 2.0kb downstream 4965 true Chr5: 7916314-7921278 Arabidopsis thaliana
AT5G23480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7919279-7921278 Arabidopsis thaliana
AT5G23480 5.0kb upstream 5.0kb upstream 7965 true Chr5: 7911314-7919278 Arabidopsis thaliana
AT5G23480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7911314-7916313 Arabidopsis thaliana
AT5G23480 5.0kb downstream 5.0kb downstream 7965 true Chr5: 7916314-7924278 Arabidopsis thaliana
AT5G23480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7919279-7924278 Arabidopsis thaliana
AT5G23480 10.0kb upstream 10.0kb upstream 12965 true Chr5: 7906314-7919278 Arabidopsis thaliana
AT5G23480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7906314-7916313 Arabidopsis thaliana
AT5G23480 10.0kb downstream 10.0kb downstream 12965 true Chr5: 7916314-7929278 Arabidopsis thaliana
AT5G23480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7919279-7929278 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360556 5261 Brassicaceae View MSA
123797976 5264 Brassicales-Malvales View MSA
124295669 5266 SBM View MSA
124148045 5268 Malvidae View MSA
124074720 5270 Rosid View MSA
123753023 5271 Pentapetalae View MSA
122797063 5272 Eudicot View MSA
122044287 5273 Angiosperm View MSA
121348598 5274 Embryophyte View MSA
123380932 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.01       High
cufflinks 0.046     Low Low
cufflinks 0.636        
cufflinks 0.057     Low  
cufflinks 0.24     Low  
cufflinks 0.091     Low  

0 Strain