Gene : AT5G23340 A. thaliana TAIR10
Defline:  (1 of 4) PTHR24006:SF524 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 Genomic Order:  2210
Name:  ? AT5G23340 Secondary Identifier:  ? PAC:19668059
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23340 0.5kb upstream 0.5kb upstream 2631 true Chr5: 7855689-7858319 Arabidopsis thaliana
AT5G23340 0.5kb upstream 0.5kb upstream 500 false Chr5: 7855689-7856188 Arabidopsis thaliana
AT5G23340 0.5kb downstream 0.5kb downstream 2631 true Chr5: 7856189-7858819 Arabidopsis thaliana
AT5G23340 0.5kb downstream 0.5kb downstream 500 false Chr5: 7858320-7858819 Arabidopsis thaliana
AT5G23340 1.0kb upstream 1.0kb upstream 3131 true Chr5: 7855189-7858319 Arabidopsis thaliana
AT5G23340 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7855189-7856188 Arabidopsis thaliana
AT5G23340 1.0kb downstream 1.0kb downstream 3131 true Chr5: 7856189-7859319 Arabidopsis thaliana
AT5G23340 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7858320-7859319 Arabidopsis thaliana
AT5G23340 2.0kb upstream 2.0kb upstream 4131 true Chr5: 7854189-7858319 Arabidopsis thaliana
AT5G23340 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7854189-7856188 Arabidopsis thaliana
AT5G23340 2.0kb downstream 2.0kb downstream 4131 true Chr5: 7856189-7860319 Arabidopsis thaliana
AT5G23340 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7858320-7860319 Arabidopsis thaliana
AT5G23340 5.0kb upstream 5.0kb upstream 7131 true Chr5: 7851189-7858319 Arabidopsis thaliana
AT5G23340 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7851189-7856188 Arabidopsis thaliana
AT5G23340 5.0kb downstream 5.0kb downstream 7131 true Chr5: 7856189-7863319 Arabidopsis thaliana
AT5G23340 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7858320-7863319 Arabidopsis thaliana
AT5G23340 10.0kb upstream 10.0kb upstream 12131 true Chr5: 7846189-7858319 Arabidopsis thaliana
AT5G23340 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7846189-7856188 Arabidopsis thaliana
AT5G23340 10.0kb downstream 10.0kb downstream 12131 true Chr5: 7856189-7868319 Arabidopsis thaliana
AT5G23340 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7858320-7868319 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364282 5261 Brassicaceae View MSA
123833971 5264 Brassicales-Malvales View MSA
124339447 5266 SBM View MSA
124239827 5268 Malvidae View MSA
124072023 5270 Rosid View MSA
123753074 5271 Pentapetalae View MSA
122793383 5272 Eudicot View MSA
122050086 5273 Angiosperm View MSA
123428966 5275 Viridiplantae View MSA
121349716 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.257        
cufflinks 8.157        
cufflinks 6.64        
cufflinks 9.719       High
cufflinks 7.062        
cufflinks 6.476        

0 Strain