Gene : HCF136 A. thaliana TAIR10
Primary Identifier:  ? AT5G23120 Defline:  (1 of 1) PTHR32010:SF6 - PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC
Genomic Order:  2187 Name:  ? AT5G23120
Secondary Identifier:  ? PAC:19671036
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23120 0.5kb upstream 0.5kb upstream 3008 true Chr5: 7777621-7780628 Arabidopsis thaliana
AT5G23120 0.5kb upstream 0.5kb upstream 500 false Chr5: 7777621-7778120 Arabidopsis thaliana
AT5G23120 0.5kb downstream 0.5kb downstream 3008 true Chr5: 7778121-7781128 Arabidopsis thaliana
AT5G23120 0.5kb downstream 0.5kb downstream 500 false Chr5: 7780629-7781128 Arabidopsis thaliana
AT5G23120 1.0kb upstream 1.0kb upstream 3508 true Chr5: 7777121-7780628 Arabidopsis thaliana
AT5G23120 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7777121-7778120 Arabidopsis thaliana
AT5G23120 1.0kb downstream 1.0kb downstream 3508 true Chr5: 7778121-7781628 Arabidopsis thaliana
AT5G23120 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7780629-7781628 Arabidopsis thaliana
AT5G23120 2.0kb upstream 2.0kb upstream 4508 true Chr5: 7776121-7780628 Arabidopsis thaliana
AT5G23120 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7776121-7778120 Arabidopsis thaliana
AT5G23120 2.0kb downstream 2.0kb downstream 4508 true Chr5: 7778121-7782628 Arabidopsis thaliana
AT5G23120 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7780629-7782628 Arabidopsis thaliana
AT5G23120 5.0kb upstream 5.0kb upstream 7508 true Chr5: 7773121-7780628 Arabidopsis thaliana
AT5G23120 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7773121-7778120 Arabidopsis thaliana
AT5G23120 5.0kb downstream 5.0kb downstream 7508 true Chr5: 7778121-7785628 Arabidopsis thaliana
AT5G23120 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7780629-7785628 Arabidopsis thaliana
AT5G23120 10.0kb upstream 10.0kb upstream 12508 true Chr5: 7768121-7780628 Arabidopsis thaliana
AT5G23120 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7768121-7778120 Arabidopsis thaliana
AT5G23120 10.0kb downstream 10.0kb downstream 12508 true Chr5: 7778121-7790628 Arabidopsis thaliana
AT5G23120 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7780629-7790628 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373072 5261 Brassicaceae View MSA
123827429 5264 Brassicales-Malvales View MSA
124338928 5266 SBM View MSA
124238957 5268 Malvidae View MSA
124062574 5270 Rosid View MSA
123745532 5271 Pentapetalae View MSA
122793353 5272 Eudicot View MSA
122042393 5273 Angiosperm View MSA
121345735 5274 Embryophyte View MSA
123424958 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 118.602     High  
cufflinks 6.608        
cufflinks 151.842     High  
cufflinks 5.97        
cufflinks 129.485     High  
cufflinks 5.767        

0 Strain