Gene : TGH A. thaliana TAIR10
Primary Identifier:  ? AT5G23080 Defline:  (1 of 1) K13123 - G patch domain-containing protein 1 (GPATCH1)
Genomic Order:  2183 Name:  ? AT5G23080
Secondary Identifier:  ? PAC:19670553
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G23080 0.5kb upstream 0.5kb upstream 6494 true Chr5: 7742940-7749433 Arabidopsis thaliana
AT5G23080 0.5kb upstream 0.5kb upstream 500 false Chr5: 7748934-7749433 Arabidopsis thaliana
AT5G23080 0.5kb downstream 0.5kb downstream 6494 true Chr5: 7742440-7748933 Arabidopsis thaliana
AT5G23080 0.5kb downstream 0.5kb downstream 500 false Chr5: 7742440-7742939 Arabidopsis thaliana
AT5G23080 1.0kb upstream 1.0kb upstream 6994 true Chr5: 7742940-7749933 Arabidopsis thaliana
AT5G23080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 7748934-7749933 Arabidopsis thaliana
AT5G23080 1.0kb downstream 1.0kb downstream 6994 true Chr5: 7741940-7748933 Arabidopsis thaliana
AT5G23080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 7741940-7742939 Arabidopsis thaliana
AT5G23080 2.0kb upstream 2.0kb upstream 7994 true Chr5: 7742940-7750933 Arabidopsis thaliana
AT5G23080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 7748934-7750933 Arabidopsis thaliana
AT5G23080 2.0kb downstream 2.0kb downstream 7994 true Chr5: 7740940-7748933 Arabidopsis thaliana
AT5G23080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 7740940-7742939 Arabidopsis thaliana
AT5G23080 5.0kb upstream 5.0kb upstream 10994 true Chr5: 7742940-7753933 Arabidopsis thaliana
AT5G23080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 7748934-7753933 Arabidopsis thaliana
AT5G23080 5.0kb downstream 5.0kb downstream 10994 true Chr5: 7737940-7748933 Arabidopsis thaliana
AT5G23080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 7737940-7742939 Arabidopsis thaliana
AT5G23080 10.0kb upstream 10.0kb upstream 15994 true Chr5: 7742940-7758933 Arabidopsis thaliana
AT5G23080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 7748934-7758933 Arabidopsis thaliana
AT5G23080 10.0kb downstream 10.0kb downstream 15994 true Chr5: 7732940-7748933 Arabidopsis thaliana
AT5G23080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 7732940-7742939 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377009 5261 Brassicaceae View MSA
123833687 5264 Brassicales-Malvales View MSA
124340277 5266 SBM View MSA
124238675 5268 Malvidae View MSA
124067571 5270 Rosid View MSA
123746578 5271 Pentapetalae View MSA
122793732 5272 Eudicot View MSA
122044115 5273 Angiosperm View MSA
121345398 5274 Embryophyte View MSA
123424133 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.147        
cufflinks 3.351        
cufflinks 1.867       Low
cufflinks 3.559       High
cufflinks 1.912        
cufflinks 2.909        

0 Strain