Gene : AT5G25790 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12446//PTHR12446:SF14 - TESMIN/TSO1-RELATED // PROTEIN LIN-54 HOMOLOG Genomic Order:  2467
Name:  ? AT5G25790 Secondary Identifier:  ? PAC:19670175
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G25790 0.5kb upstream 0.5kb upstream 2660 true Chr5: 8977100-8979759 Arabidopsis thaliana
AT5G25790 0.5kb upstream 0.5kb upstream 500 false Chr5: 8979260-8979759 Arabidopsis thaliana
AT5G25790 0.5kb downstream 0.5kb downstream 2660 true Chr5: 8976600-8979259 Arabidopsis thaliana
AT5G25790 0.5kb downstream 0.5kb downstream 500 false Chr5: 8976600-8977099 Arabidopsis thaliana
AT5G25790 1.0kb upstream 1.0kb upstream 3160 true Chr5: 8977100-8980259 Arabidopsis thaliana
AT5G25790 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8979260-8980259 Arabidopsis thaliana
AT5G25790 1.0kb downstream 1.0kb downstream 3160 true Chr5: 8976100-8979259 Arabidopsis thaliana
AT5G25790 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8976100-8977099 Arabidopsis thaliana
AT5G25790 2.0kb upstream 2.0kb upstream 4160 true Chr5: 8977100-8981259 Arabidopsis thaliana
AT5G25790 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8979260-8981259 Arabidopsis thaliana
AT5G25790 2.0kb downstream 2.0kb downstream 4160 true Chr5: 8975100-8979259 Arabidopsis thaliana
AT5G25790 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8975100-8977099 Arabidopsis thaliana
AT5G25790 5.0kb upstream 5.0kb upstream 7160 true Chr5: 8977100-8984259 Arabidopsis thaliana
AT5G25790 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8979260-8984259 Arabidopsis thaliana
AT5G25790 5.0kb downstream 5.0kb downstream 7160 true Chr5: 8972100-8979259 Arabidopsis thaliana
AT5G25790 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8972100-8977099 Arabidopsis thaliana
AT5G25790 10.0kb upstream 10.0kb upstream 12160 true Chr5: 8977100-8989259 Arabidopsis thaliana
AT5G25790 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8979260-8989259 Arabidopsis thaliana
AT5G25790 10.0kb downstream 10.0kb downstream 12160 true Chr5: 8967100-8979259 Arabidopsis thaliana
AT5G25790 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8967100-8977099 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370688 5261 Brassicaceae View MSA
123800018 5264 Brassicales-Malvales View MSA
124297479 5266 SBM View MSA
124250296 5268 Malvidae View MSA
124073208 5270 Rosid View MSA
123756225 5271 Pentapetalae View MSA
122777394 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.457       High
cufflinks 0.984        
cufflinks 1.008        
cufflinks 0.936        
cufflinks 1.362       High
cufflinks 0.803       Low

0 Strain