Gene : AT5G25270 A. thaliana TAIR10
Defline:  (1 of 3) PTHR15204 - SCYTHE/BAT3 Genomic Order:  2418
Name:  ? AT5G25270 Secondary Identifier:  ? PAC:19672403
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G25270 0.5kb upstream 0.5kb upstream 5711 true Chr5: 8757547-8763257 Arabidopsis thaliana
AT5G25270 0.5kb upstream 0.5kb upstream 500 false Chr5: 8762758-8763257 Arabidopsis thaliana
AT5G25270 0.5kb downstream 0.5kb downstream 5711 true Chr5: 8757047-8762757 Arabidopsis thaliana
AT5G25270 0.5kb downstream 0.5kb downstream 500 false Chr5: 8757047-8757546 Arabidopsis thaliana
AT5G25270 1.0kb upstream 1.0kb upstream 6211 true Chr5: 8757547-8763757 Arabidopsis thaliana
AT5G25270 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8762758-8763757 Arabidopsis thaliana
AT5G25270 1.0kb downstream 1.0kb downstream 6211 true Chr5: 8756547-8762757 Arabidopsis thaliana
AT5G25270 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8756547-8757546 Arabidopsis thaliana
AT5G25270 2.0kb upstream 2.0kb upstream 7211 true Chr5: 8757547-8764757 Arabidopsis thaliana
AT5G25270 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8762758-8764757 Arabidopsis thaliana
AT5G25270 2.0kb downstream 2.0kb downstream 7211 true Chr5: 8755547-8762757 Arabidopsis thaliana
AT5G25270 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8755547-8757546 Arabidopsis thaliana
AT5G25270 5.0kb upstream 5.0kb upstream 10211 true Chr5: 8757547-8767757 Arabidopsis thaliana
AT5G25270 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8762758-8767757 Arabidopsis thaliana
AT5G25270 5.0kb downstream 5.0kb downstream 10211 true Chr5: 8752547-8762757 Arabidopsis thaliana
AT5G25270 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8752547-8757546 Arabidopsis thaliana
AT5G25270 10.0kb upstream 10.0kb upstream 15211 true Chr5: 8757547-8772757 Arabidopsis thaliana
AT5G25270 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8762758-8772757 Arabidopsis thaliana
AT5G25270 10.0kb downstream 10.0kb downstream 15211 true Chr5: 8747547-8762757 Arabidopsis thaliana
AT5G25270 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8747547-8757546 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377564 5261 Brassicaceae View MSA
123829183 5264 Brassicales-Malvales View MSA
124346308 5266 SBM View MSA
124251055 5268 Malvidae View MSA
124065095 5270 Rosid View MSA
123745947 5271 Pentapetalae View MSA
122786650 5272 Eudicot View MSA
122045332 5273 Angiosperm View MSA
121348646 5274 Embryophyte View MSA
123427478 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.528        
cufflinks 16.143        
cufflinks 11.043       Low
cufflinks 15.495        
cufflinks 13.499        
cufflinks 15.039        

0 Strain