Gene : AT5G25200 A. thaliana TAIR10
Defline:  (1 of 14) PTHR31286:SF1 - NUCLEIC ACID BINDING / ZINC ION BINDING PROTEIN-RELATED Genomic Order:  2410
Name:  ? AT5G25200 Secondary Identifier:  ? PAC:19670394
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G25200 0.5kb upstream 0.5kb upstream 1604 true Chr5: 8716766-8718369 Arabidopsis thaliana
AT5G25200 0.5kb upstream 0.5kb upstream 500 false Chr5: 8717870-8718369 Arabidopsis thaliana
AT5G25200 0.5kb downstream 0.5kb downstream 1604 true Chr5: 8716266-8717869 Arabidopsis thaliana
AT5G25200 0.5kb downstream 0.5kb downstream 500 false Chr5: 8716266-8716765 Arabidopsis thaliana
AT5G25200 1.0kb upstream 1.0kb upstream 2104 true Chr5: 8716766-8718869 Arabidopsis thaliana
AT5G25200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8717870-8718869 Arabidopsis thaliana
AT5G25200 1.0kb downstream 1.0kb downstream 2104 true Chr5: 8715766-8717869 Arabidopsis thaliana
AT5G25200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8715766-8716765 Arabidopsis thaliana
AT5G25200 2.0kb upstream 2.0kb upstream 3104 true Chr5: 8716766-8719869 Arabidopsis thaliana
AT5G25200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8717870-8719869 Arabidopsis thaliana
AT5G25200 2.0kb downstream 2.0kb downstream 3104 true Chr5: 8714766-8717869 Arabidopsis thaliana
AT5G25200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8714766-8716765 Arabidopsis thaliana
AT5G25200 5.0kb upstream 5.0kb upstream 6104 true Chr5: 8716766-8722869 Arabidopsis thaliana
AT5G25200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8717870-8722869 Arabidopsis thaliana
AT5G25200 5.0kb downstream 5.0kb downstream 6104 true Chr5: 8711766-8717869 Arabidopsis thaliana
AT5G25200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8711766-8716765 Arabidopsis thaliana
AT5G25200 10.0kb upstream 10.0kb upstream 11104 true Chr5: 8716766-8727869 Arabidopsis thaliana
AT5G25200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8717870-8727869 Arabidopsis thaliana
AT5G25200 10.0kb downstream 10.0kb downstream 11104 true Chr5: 8706766-8717869 Arabidopsis thaliana
AT5G25200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8706766-8716765 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379755 5261 Brassicaceae View MSA
123840396 5264 Brassicales-Malvales View MSA
124322713 5266 SBM View MSA
124254241 5268 Malvidae View MSA
124051495 5270 Rosid View MSA
123753554 5271 Pentapetalae View MSA
122797941 5272 Eudicot View MSA
122051690 5273 Angiosperm View MSA
121351675 5274 Embryophyte View MSA
123428354 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.01     Low Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain