Gene : AT5G25100 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10766//PTHR10766:SF46 - TRANSMEMBRANE 9 SUPERFAMILY PROTEIN // ENDOMEMBRANE FAMILY PROTEIN 70 Genomic Order:  2399
Name:  ? AT5G25100 Secondary Identifier:  ? PAC:19670633
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G25100 0.5kb upstream 0.5kb upstream 3671 true Chr5: 8648006-8651676 Arabidopsis thaliana
AT5G25100 0.5kb upstream 0.5kb upstream 500 false Chr5: 8651177-8651676 Arabidopsis thaliana
AT5G25100 0.5kb downstream 0.5kb downstream 3671 true Chr5: 8647506-8651176 Arabidopsis thaliana
AT5G25100 0.5kb downstream 0.5kb downstream 500 false Chr5: 8647506-8648005 Arabidopsis thaliana
AT5G25100 1.0kb upstream 1.0kb upstream 4171 true Chr5: 8648006-8652176 Arabidopsis thaliana
AT5G25100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8651177-8652176 Arabidopsis thaliana
AT5G25100 1.0kb downstream 1.0kb downstream 4171 true Chr5: 8647006-8651176 Arabidopsis thaliana
AT5G25100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8647006-8648005 Arabidopsis thaliana
AT5G25100 2.0kb upstream 2.0kb upstream 5171 true Chr5: 8648006-8653176 Arabidopsis thaliana
AT5G25100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8651177-8653176 Arabidopsis thaliana
AT5G25100 2.0kb downstream 2.0kb downstream 5171 true Chr5: 8646006-8651176 Arabidopsis thaliana
AT5G25100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8646006-8648005 Arabidopsis thaliana
AT5G25100 5.0kb upstream 5.0kb upstream 8171 true Chr5: 8648006-8656176 Arabidopsis thaliana
AT5G25100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8651177-8656176 Arabidopsis thaliana
AT5G25100 5.0kb downstream 5.0kb downstream 8171 true Chr5: 8643006-8651176 Arabidopsis thaliana
AT5G25100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8643006-8648005 Arabidopsis thaliana
AT5G25100 10.0kb upstream 10.0kb upstream 13171 true Chr5: 8648006-8661176 Arabidopsis thaliana
AT5G25100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8651177-8661176 Arabidopsis thaliana
AT5G25100 10.0kb downstream 10.0kb downstream 13171 true Chr5: 8638006-8651176 Arabidopsis thaliana
AT5G25100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8638006-8648005 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381200 5261 Brassicaceae View MSA
123838628 5264 Brassicales-Malvales View MSA
124341975 5266 SBM View MSA
124240658 5268 Malvidae View MSA
124067102 5270 Rosid View MSA
123742579 5271 Pentapetalae View MSA
122788087 5272 Eudicot View MSA
122049863 5273 Angiosperm View MSA
121348852 5274 Embryophyte View MSA
123425843 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.638        
cufflinks 33.241     High  
cufflinks 18.248        
cufflinks 35.098     High  
cufflinks 17.032       Low
cufflinks 42.724     High High

0 Strain