Gene : AT5G24890 A. thaliana TAIR10
Defline:  (1 of 9) KOG4210 - Nuclear localization sequence binding protein Genomic Order:  2378
Name:  ? AT5G24890 Secondary Identifier:  ? PAC:19668518
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24890 0.5kb upstream 0.5kb upstream 1716 true Chr5: 8558191-8559906 Arabidopsis thaliana
AT5G24890 0.5kb upstream 0.5kb upstream 500 false Chr5: 8559407-8559906 Arabidopsis thaliana
AT5G24890 0.5kb downstream 0.5kb downstream 1716 true Chr5: 8557691-8559406 Arabidopsis thaliana
AT5G24890 0.5kb downstream 0.5kb downstream 500 false Chr5: 8557691-8558190 Arabidopsis thaliana
AT5G24890 1.0kb upstream 1.0kb upstream 2216 true Chr5: 8558191-8560406 Arabidopsis thaliana
AT5G24890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8559407-8560406 Arabidopsis thaliana
AT5G24890 1.0kb downstream 1.0kb downstream 2216 true Chr5: 8557191-8559406 Arabidopsis thaliana
AT5G24890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8557191-8558190 Arabidopsis thaliana
AT5G24890 2.0kb upstream 2.0kb upstream 3216 true Chr5: 8558191-8561406 Arabidopsis thaliana
AT5G24890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8559407-8561406 Arabidopsis thaliana
AT5G24890 2.0kb downstream 2.0kb downstream 3216 true Chr5: 8556191-8559406 Arabidopsis thaliana
AT5G24890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8556191-8558190 Arabidopsis thaliana
AT5G24890 5.0kb upstream 5.0kb upstream 6216 true Chr5: 8558191-8564406 Arabidopsis thaliana
AT5G24890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8559407-8564406 Arabidopsis thaliana
AT5G24890 5.0kb downstream 5.0kb downstream 6216 true Chr5: 8553191-8559406 Arabidopsis thaliana
AT5G24890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8553191-8558190 Arabidopsis thaliana
AT5G24890 10.0kb upstream 10.0kb upstream 11216 true Chr5: 8558191-8569406 Arabidopsis thaliana
AT5G24890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8559407-8569406 Arabidopsis thaliana
AT5G24890 10.0kb downstream 10.0kb downstream 11216 true Chr5: 8548191-8559406 Arabidopsis thaliana
AT5G24890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8548191-8558190 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378290 5261 Brassicaceae View MSA
123839784 5264 Brassicales-Malvales View MSA
124339869 5266 SBM View MSA
124240217 5268 Malvidae View MSA
124073075 5270 Rosid View MSA
123744259 5271 Pentapetalae View MSA
122795127 5272 Eudicot View MSA
122049442 5273 Angiosperm View MSA
121350445 5274 Embryophyte View MSA
123381735 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.09     High High
cufflinks 25.496       Low
cufflinks 50.223     High  
cufflinks 35.696     High  
cufflinks 55.606     High  
cufflinks 29.068        

0 Strain