Gene : AT5G27760 A. thaliana TAIR10
Defline:  (1 of 3) PF04588 - Hypoxia induced protein conserved region (HIG_1_N) Genomic Order:  2652
Name:  ? AT5G27760 Secondary Identifier:  ? PAC:19671835
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27760 0.5kb upstream 0.5kb upstream 1948 true Chr5: 9829843-9831790 Arabidopsis thaliana
AT5G27760 0.5kb upstream 0.5kb upstream 500 false Chr5: 9829843-9830342 Arabidopsis thaliana
AT5G27760 0.5kb downstream 0.5kb downstream 1948 true Chr5: 9830343-9832290 Arabidopsis thaliana
AT5G27760 0.5kb downstream 0.5kb downstream 500 false Chr5: 9831791-9832290 Arabidopsis thaliana
AT5G27760 1.0kb upstream 1.0kb upstream 2448 true Chr5: 9829343-9831790 Arabidopsis thaliana
AT5G27760 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9829343-9830342 Arabidopsis thaliana
AT5G27760 1.0kb downstream 1.0kb downstream 2448 true Chr5: 9830343-9832790 Arabidopsis thaliana
AT5G27760 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9831791-9832790 Arabidopsis thaliana
AT5G27760 2.0kb upstream 2.0kb upstream 3448 true Chr5: 9828343-9831790 Arabidopsis thaliana
AT5G27760 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9828343-9830342 Arabidopsis thaliana
AT5G27760 2.0kb downstream 2.0kb downstream 3448 true Chr5: 9830343-9833790 Arabidopsis thaliana
AT5G27760 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9831791-9833790 Arabidopsis thaliana
AT5G27760 5.0kb upstream 5.0kb upstream 6448 true Chr5: 9825343-9831790 Arabidopsis thaliana
AT5G27760 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9825343-9830342 Arabidopsis thaliana
AT5G27760 5.0kb downstream 5.0kb downstream 6448 true Chr5: 9830343-9836790 Arabidopsis thaliana
AT5G27760 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9831791-9836790 Arabidopsis thaliana
AT5G27760 10.0kb upstream 10.0kb upstream 11448 true Chr5: 9820343-9831790 Arabidopsis thaliana
AT5G27760 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9820343-9830342 Arabidopsis thaliana
AT5G27760 10.0kb downstream 10.0kb downstream 11448 true Chr5: 9830343-9841790 Arabidopsis thaliana
AT5G27760 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9831791-9841790 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379648 5261 Brassicaceae View MSA
123833742 5264 Brassicales-Malvales View MSA
124343134 5266 SBM View MSA
124253339 5268 Malvidae View MSA
124071085 5270 Rosid View MSA
123747156 5271 Pentapetalae View MSA
122795420 5272 Eudicot View MSA
122049658 5273 Angiosperm View MSA
123428942 5275 Viridiplantae View MSA
121349742 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.359        
cufflinks 22.871        
cufflinks 20.311       Low
cufflinks 28.604       High
cufflinks 23.375        
cufflinks 22.131        

0 Strain