Gene : AT5G27730 A. thaliana TAIR10
Defline:  (1 of 1) K10532 - heparan-alpha-glucosaminide N-acetyltransferase (HGSNAT) Genomic Order:  2649
Name:  ? AT5G27730 Secondary Identifier:  ? PAC:19668685
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27730 0.5kb upstream 0.5kb upstream 3338 true Chr5: 9819749-9823086 Arabidopsis thaliana
AT5G27730 0.5kb upstream 0.5kb upstream 500 false Chr5: 9819749-9820248 Arabidopsis thaliana
AT5G27730 0.5kb downstream 0.5kb downstream 3338 true Chr5: 9820249-9823586 Arabidopsis thaliana
AT5G27730 0.5kb downstream 0.5kb downstream 500 false Chr5: 9823087-9823586 Arabidopsis thaliana
AT5G27730 1.0kb upstream 1.0kb upstream 3838 true Chr5: 9819249-9823086 Arabidopsis thaliana
AT5G27730 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9819249-9820248 Arabidopsis thaliana
AT5G27730 1.0kb downstream 1.0kb downstream 3838 true Chr5: 9820249-9824086 Arabidopsis thaliana
AT5G27730 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9823087-9824086 Arabidopsis thaliana
AT5G27730 2.0kb upstream 2.0kb upstream 4838 true Chr5: 9818249-9823086 Arabidopsis thaliana
AT5G27730 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9818249-9820248 Arabidopsis thaliana
AT5G27730 2.0kb downstream 2.0kb downstream 4838 true Chr5: 9820249-9825086 Arabidopsis thaliana
AT5G27730 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9823087-9825086 Arabidopsis thaliana
AT5G27730 5.0kb upstream 5.0kb upstream 7838 true Chr5: 9815249-9823086 Arabidopsis thaliana
AT5G27730 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9815249-9820248 Arabidopsis thaliana
AT5G27730 5.0kb downstream 5.0kb downstream 7838 true Chr5: 9820249-9828086 Arabidopsis thaliana
AT5G27730 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9823087-9828086 Arabidopsis thaliana
AT5G27730 10.0kb upstream 10.0kb upstream 12838 true Chr5: 9810249-9823086 Arabidopsis thaliana
AT5G27730 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9810249-9820248 Arabidopsis thaliana
AT5G27730 10.0kb downstream 10.0kb downstream 12838 true Chr5: 9820249-9833086 Arabidopsis thaliana
AT5G27730 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9823087-9833086 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373891 5261 Brassicaceae View MSA
123834852 5264 Brassicales-Malvales View MSA
124343000 5266 SBM View MSA
124246831 5268 Malvidae View MSA
124070416 5270 Rosid View MSA
123748942 5271 Pentapetalae View MSA
122794052 5272 Eudicot View MSA
122048161 5273 Angiosperm View MSA
121350425 5274 Embryophyte View MSA
123424378 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.459        
cufflinks 5.256        
cufflinks 10.894       High
cufflinks 4.416        
cufflinks 10.249        
cufflinks 3.89       Low

0 Strain