Gene : AT5G27560 A. thaliana TAIR10
Defline:  (1 of 5) PF09353 - Domain of unknown function (DUF1995) (DUF1995) Genomic Order:  2632
Name:  ? AT5G27560 Secondary Identifier:  ? PAC:19672155
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27560 0.5kb upstream 0.5kb upstream 2817 true Chr5: 9731102-9733918 Arabidopsis thaliana
AT5G27560 0.5kb upstream 0.5kb upstream 500 false Chr5: 9731102-9731601 Arabidopsis thaliana
AT5G27560 0.5kb downstream 0.5kb downstream 2817 true Chr5: 9731602-9734418 Arabidopsis thaliana
AT5G27560 0.5kb downstream 0.5kb downstream 500 false Chr5: 9733919-9734418 Arabidopsis thaliana
AT5G27560 1.0kb upstream 1.0kb upstream 3317 true Chr5: 9730602-9733918 Arabidopsis thaliana
AT5G27560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9730602-9731601 Arabidopsis thaliana
AT5G27560 1.0kb downstream 1.0kb downstream 3317 true Chr5: 9731602-9734918 Arabidopsis thaliana
AT5G27560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9733919-9734918 Arabidopsis thaliana
AT5G27560 2.0kb upstream 2.0kb upstream 4317 true Chr5: 9729602-9733918 Arabidopsis thaliana
AT5G27560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9729602-9731601 Arabidopsis thaliana
AT5G27560 2.0kb downstream 2.0kb downstream 4317 true Chr5: 9731602-9735918 Arabidopsis thaliana
AT5G27560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9733919-9735918 Arabidopsis thaliana
AT5G27560 5.0kb upstream 5.0kb upstream 7317 true Chr5: 9726602-9733918 Arabidopsis thaliana
AT5G27560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9726602-9731601 Arabidopsis thaliana
AT5G27560 5.0kb downstream 5.0kb downstream 7317 true Chr5: 9731602-9738918 Arabidopsis thaliana
AT5G27560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9733919-9738918 Arabidopsis thaliana
AT5G27560 10.0kb upstream 10.0kb upstream 12317 true Chr5: 9721602-9733918 Arabidopsis thaliana
AT5G27560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9721602-9731601 Arabidopsis thaliana
AT5G27560 10.0kb downstream 10.0kb downstream 12317 true Chr5: 9731602-9743918 Arabidopsis thaliana
AT5G27560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9733919-9743918 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364596 5261 Brassicaceae View MSA
123830630 5264 Brassicales-Malvales View MSA
124343230 5266 SBM View MSA
124237452 5268 Malvidae View MSA
124064170 5270 Rosid View MSA
123737767 5271 Pentapetalae View MSA
122791046 5272 Eudicot View MSA
122043787 5273 Angiosperm View MSA
121346197 5274 Embryophyte View MSA
123425008 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.368        
cufflinks 4.303        
cufflinks 35.447     High High
cufflinks 3.721        
cufflinks 28.837     High  
cufflinks 4.008        

0 Strain