Gene : AT5G27460 A. thaliana TAIR10
Defline:  (1 of 367) PF01535 - PPR repeat (PPR) Genomic Order:  2623
Name:  ? AT5G27460 Secondary Identifier:  ? PAC:19667980
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27460 0.5kb upstream 0.5kb upstream 2079 true Chr5: 9693262-9695340 Arabidopsis thaliana
AT5G27460 0.5kb upstream 0.5kb upstream 500 false Chr5: 9694841-9695340 Arabidopsis thaliana
AT5G27460 0.5kb downstream 0.5kb downstream 2079 true Chr5: 9692762-9694840 Arabidopsis thaliana
AT5G27460 0.5kb downstream 0.5kb downstream 500 false Chr5: 9692762-9693261 Arabidopsis thaliana
AT5G27460 1.0kb upstream 1.0kb upstream 2579 true Chr5: 9693262-9695840 Arabidopsis thaliana
AT5G27460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9694841-9695840 Arabidopsis thaliana
AT5G27460 1.0kb downstream 1.0kb downstream 2579 true Chr5: 9692262-9694840 Arabidopsis thaliana
AT5G27460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9692262-9693261 Arabidopsis thaliana
AT5G27460 2.0kb upstream 2.0kb upstream 3579 true Chr5: 9693262-9696840 Arabidopsis thaliana
AT5G27460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9694841-9696840 Arabidopsis thaliana
AT5G27460 2.0kb downstream 2.0kb downstream 3579 true Chr5: 9691262-9694840 Arabidopsis thaliana
AT5G27460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9691262-9693261 Arabidopsis thaliana
AT5G27460 5.0kb upstream 5.0kb upstream 6579 true Chr5: 9693262-9699840 Arabidopsis thaliana
AT5G27460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9694841-9699840 Arabidopsis thaliana
AT5G27460 5.0kb downstream 5.0kb downstream 6579 true Chr5: 9688262-9694840 Arabidopsis thaliana
AT5G27460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9688262-9693261 Arabidopsis thaliana
AT5G27460 10.0kb upstream 10.0kb upstream 11579 true Chr5: 9693262-9704840 Arabidopsis thaliana
AT5G27460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9694841-9704840 Arabidopsis thaliana
AT5G27460 10.0kb downstream 10.0kb downstream 11579 true Chr5: 9683262-9694840 Arabidopsis thaliana
AT5G27460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9683262-9693261 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376440 5261 Brassicaceae View MSA
123829670 5264 Brassicales-Malvales View MSA
124343185 5266 SBM View MSA
124239016 5268 Malvidae View MSA
124062477 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.146        
cufflinks 8.221        
cufflinks 5.834       Low
cufflinks 9.287       High
cufflinks 7.48        
cufflinks 7.747        

0 Strain