Gene : AT5G27490 A. thaliana TAIR10
Defline:  (1 of 3) KOG3114 - Uncharacterized conserved protein Genomic Order:  2625
Name:  ? AT5G27490 Secondary Identifier:  ? PAC:19668866
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G27490 0.5kb upstream 0.5kb upstream 2385 true Chr5: 9702835-9705219 Arabidopsis thaliana
AT5G27490 0.5kb upstream 0.5kb upstream 500 false Chr5: 9704720-9705219 Arabidopsis thaliana
AT5G27490 0.5kb downstream 0.5kb downstream 2385 true Chr5: 9702335-9704719 Arabidopsis thaliana
AT5G27490 0.5kb downstream 0.5kb downstream 500 false Chr5: 9702335-9702834 Arabidopsis thaliana
AT5G27490 1.0kb upstream 1.0kb upstream 2885 true Chr5: 9702835-9705719 Arabidopsis thaliana
AT5G27490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9704720-9705719 Arabidopsis thaliana
AT5G27490 1.0kb downstream 1.0kb downstream 2885 true Chr5: 9701835-9704719 Arabidopsis thaliana
AT5G27490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9701835-9702834 Arabidopsis thaliana
AT5G27490 2.0kb upstream 2.0kb upstream 3885 true Chr5: 9702835-9706719 Arabidopsis thaliana
AT5G27490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9704720-9706719 Arabidopsis thaliana
AT5G27490 2.0kb downstream 2.0kb downstream 3885 true Chr5: 9700835-9704719 Arabidopsis thaliana
AT5G27490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9700835-9702834 Arabidopsis thaliana
AT5G27490 5.0kb upstream 5.0kb upstream 6885 true Chr5: 9702835-9709719 Arabidopsis thaliana
AT5G27490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9704720-9709719 Arabidopsis thaliana
AT5G27490 5.0kb downstream 5.0kb downstream 6885 true Chr5: 9697835-9704719 Arabidopsis thaliana
AT5G27490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9697835-9702834 Arabidopsis thaliana
AT5G27490 10.0kb upstream 10.0kb upstream 11885 true Chr5: 9702835-9714719 Arabidopsis thaliana
AT5G27490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9704720-9714719 Arabidopsis thaliana
AT5G27490 10.0kb downstream 10.0kb downstream 11885 true Chr5: 9692835-9704719 Arabidopsis thaliana
AT5G27490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9692835-9702834 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377825 5261 Brassicaceae View MSA
123840619 5264 Brassicales-Malvales View MSA
124341227 5266 SBM View MSA
124240730 5268 Malvidae View MSA
124062675 5270 Rosid View MSA
123739303 5271 Pentapetalae View MSA
122790193 5272 Eudicot View MSA
122045240 5273 Angiosperm View MSA
121344088 5274 Embryophyte View MSA
123427303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.419        
cufflinks 7.449        
cufflinks 3.768        
cufflinks 7.805        
cufflinks 3.062       Low
cufflinks 8.87       High

0 Strain